BIBM 2008:
Philadephia, Pennsylvania, USA
Xue-wen Chen, Xiaohua Hu, Sun Kim (Eds.):
2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, 3-5 November 2008, Philadephia, Pennsylvania, USA.
IEEE Computer Society 2008, ISBN 978-0-7695-3452-7 
Regular Papers:
Bioinformatics of Diseases
Regular Papers:
Biological Databases and Ontologies
- Hong Yang, Rajshekhar Sunderraman, Hao Tian:
bcnQL: A Query Language for Biochemical Network.
11-16
- Xiaohua Zhou, Xiaohua Hu, Xiaodan Zhang, Daniel Duanqing Wu, Tingting He, Aijing Luo:
A Mixture Language Model for Class-Attribute Mining from Biomedical Literature Digital Library.
17-22
- Li An, Hongbo Xie, Mark H. Chin, Zoran Obradovic, Desmond J. Smith, Vasileios Megalooikonomou:
Analysis of Multiplex Gene Expression Maps Obtained by Voxelation.
23-28
Regular Papers:
Biological Data Mining and Visualization
- Hong Zhou, Xiao Zeng:
Energy Profile and Secondary Structure Impact shRNA Efficacy.
31-36
- Saira Ali Kazmi, Yoo-Ah Kim, Baikang Pei, Ravi Nori, David W. Rowe, Hsin-Wei Wang, Alan Wong, Dong-Guk Shin:
Meta Analysis of Microarray Data Using Gene Regulation Pathways.
37-42
- Anca I. D. Bucur, Jasper van Leeuwen, Nevenka Dimitrova, Chetan Mittal:
Frequency Sorting Method for Spectral Analysis of DNA Sequences.
43-50
- John Hayward, Sergio A. Alvarez, Carolina Ruiz, Mary Sullivan, Jennifer Tseng, Giles Whalen:
Knowledge Discovery in Clinical Performance of Cancer Patients.
51-58
- Young-Rae Cho, Aidong Zhang:
Discovering Frequent Patterns of Functional Associations in Protein Interaction Networks for Function Prediction.
59-65
- Zheng Chen, Jian Tang:
Using Gene Ontology to Enhance Effectiveness of Similarity Measures for Microarray Data.
66-71
- Rachel Caldwell, Yan-Xia Lin, Ren Zhang:
Correlations of Length Distributions between Non-coding and Coding Sequences of Arabidopsis thaliana.
72-77
- Christine Martin, Antoine Cornuéjols:
Identifying Interface Elements Implied in Protein-Protein Interactions Using Statistical Tests and Frequent Item Sets.
78-83
- Patrick C. H. Ma, Keith C. C. Chan:
Mining Fuzzy Association Patterns in Gene Expression Data for Gene Function Prediction.
84-89
- Jeffrey D. Leblond, Andrew D. Lasiter, Cen Li, Ramiro Logares, Karin Rengefors, Terence J. Evens:
Applying Clustering and Phylogeny Analysis to Study Dinoflagellates Based on Sterol Composition.
90-97
- Bernard Chen, Jieyue He, Stephen Pellicer, Yi Pan:
Protein Sequence Motif Super-Rule-Tree (SRT) Structure Constructed by Hybrid Hierarchical K-Means Clustering Algorithm.
98-103
- Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar:
Using Global Sequence Similarity to Enhance Biological Sequence Labeling.
104-111
Regular Papers:
Comparative Genomics
Regular Papers:
Computational Systems Biology
Regular Papers:
Microarray Data Analysis
Regular Papers:
Protein Structure, Function, and Interactions
- Thomas Grindinger, Feng Luo, Xiu-Feng Wan, Richard H. Scheuermann:
Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation Insights.
179-186
- Xiaotong Lin, Mei Liu, Xue-wen Chen:
Protein-Protein Interaction Prediction and Assessment from Model Organisms.
187-192
- Seak Fei Lei, Jun Huan:
Towards Site-Based Protein Functional Annotations.
193-198
- Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha:
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.
199-206
- Andrew C. Doxey, Zhenyu Cheng, Brendan J. McConkey:
Discrimination of Insoluble-Carbohydrate Binding Proteins and Their Binding Sites Using a 3D Motif Detection Method.
207-213
Regular Papers:
Sequence Analysis, Evolution and Phylogeny
Regular Papers:
Healthcare Informatics
Regular Papers:
Biomedical Text Mining and Ontologies
Short Papers:
Bioinformatics of Diseases
- Udi Rubinstein, Yifat Felder, Nana Ginzbourg, Michael Gurevich, Tamir Tuller:
Editing Bayesian Networks: A New Approach for Combining Prior Knowledge and Gene Expression Measurements for Researching Diseases.
273-277
- Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra:
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles.
278-283
- Maja Hadzic, Meifania Chen, Tharam S. Dillon:
Towards the Mental Health Ontology.
284-288
- Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar:
Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information.
289-292
Short Papers:
Biological Databases and Ontologies
Short Papers:
Biological Data Mining and Visualization
- Qiang Wang, Yunming Ye, Joshua Zhexue Huang:
A Changing Window Approach to Exploring Gene Expression Patterns.
301-304
- Lin Liu, Li Xiong, James J. Lu, Kim M. Gernert, Vicki Hertzberg:
Comparing and Clustering Flow Cytometry Data.
305-309
- Jiarui Ding, Jin-Hong Shi, An-Min Zou, Fang-Xiang Wu:
Feature Selection for Tandem Mass Spectrum Quality Assessment.
310-313
- Antonina Mitrofanova, Vladimir Pavlovic, Bud Mishra:
Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources.
314-318
Short Papers:
Computational Systems Biology
- Winnie W. M. Lam, Keith C. C. Chan:
A Graph Mining Algorithm for Classifying Chemical Compounds.
321-324
- Perry Evans, Ted Sandler, Lyle H. Ungar:
Protein-Protein Interaction Network Alignment by Quantitative Simulation.
325-328
- Peng Yu, Xi Chen, David Z. Pan, Andrew D. Ellington:
Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological Clock.
329-334
- Taehyong Kim, Woochang Hwang, Aidong Zhang, Surajit Sen, Murali Ramanathan:
Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South Korea.
335-338
- Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen:
Reconstruction of Regulator Activity in E. coli Post-Transcription Processes.
339-342
- Erliang Zeng, Giri Narasimhan, Lisa Schneper, Kalai Mathee:
A Functional Network of Yeast Genes Using Gene Ontology Information.
343-346
Short Papers:
Gene Regulation and Transcriptomics
Short Papers:
Microarray Data Analysis
- Junwan Liu, Zhoujun Li, Feifei Liu, Yiming Chen:
Multi-objective Particle Swarm Optimization Biclustering of Microarray Data.
363-366
- Gyan Prakash Srivastava, Jing Qiu, Dong Xu:
Functional Annotation from Meta-analysis of Microarray Datasets.
367-371
- Siyuan Ren, Zoran Obradovic:
Improvement of Survival Prediction from Gene Expression Profiles by Mining of Prior Knowledge.
372-375
- Gaurav Pandey, Lakshmi Naarayanan Ramakrishnan, Michael Steinbach, Vipin Kumar:
Systematic Evaluation of Scaling Methods for Gene Expression Data.
376-381
- Azadeh Mohammadi, Mohammad Hossein Saraee:
Estimating Missing Value in Microarray Data Using Fuzzy Clustering and Gene Ontology.
382-385
- Xin Zhou, X. Y. Wu, K. Z. Mao, David P. Tuck:
Fast Gene Selection for Microarray Data Using SVM-Based Evaluation Criterion.
386-389
Short Papers:
Protein Structure, Function, and Interactions
- Yazhene Krishnaraj, Chandan K. Reddy:
Boosting Methods for Protein Fold Recognition: An Empirical Comparison.
393-396
- Ivan Merelli, Paolo Cozzi, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi:
Images Based System for Surface Matching in Macromolecular Screening.
397-401
- Majid Masso, Ewy Mathe, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman:
Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein.
402-406
- Hui Liu, Hai Deng:
Identifying Calcium-Binding Sites with Oxygen-Carbon Shell Geometric and Chemic Criteria-A Graph-Based Approach.
407-410
- Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk:
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction.
411-416
- Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara:
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations.
417-420
- Vítor Santos Costa, Nuno A. Fonseca, Rui Camacho:
LogCHEM: Interactive Discriminative Mining of Chemical Structure.
421-426
Short Papers:
Sequence Analysis, Evolution and Phylogeny
Short Papers:
Healthcare Informatics
Short Papers:
Biomedical Text Mining and Ontologies
- Vasileios Kandylas, Lyle H. Ungar, Ted Sandler, Shane Jensen:
Multiway Clustering for Creating Biomedical Term Sets.
449-452
- Lawrence H. Reeve, Hyoil Han, Ari D. Brooks:
Online Biomedical Concept Annotation Using Language Model Mapping.
453-456
- Min Song, Alex Rudniy:
Detecting Duplicate Biological Entities Using Markov Random Field-Based Edit Distance.
457-460
- Guixian Xu, Lanlan Yin, Manabu Torii, Zhendong Niu, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu:
Document Classification for Mining Host Pathogen Protein-Protein Interactions.
461-466
- Zhang-Zhi Hu, K. Bretonnel Cohen, Lynette Hirschman, Alfonso Valencia, Hongfang Liu, Michelle G. Giglio, Cathy H. Wu:
iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology.
467-472
- Syed Toufeeq Ahmed, Hasan Davulcu, Chitta Baral:
Extracting Protein-Protein Interactions from MEDLINE Using Syntactic Roles.
473-476
Last update Sat May 18 18:09:45 2013
CET by the DBLP Team — 
Data released under the ODC-BY 1.0 license — See also our legal information page
