2. CMSB 2004:
Paris, France
Vincent Danos, Vincent Schächter (Eds.):
Computational Methods in Systems Biology, International Conference, CMSB 2004, Paris, France, May 26-28, 2004, Revised Selected Papers.
Lecture Notes in Computer Science 3082 Springer 2005, ISBN 3-540-25375-0 
Long Papers
- Sergio Pozzi, Gianluca Della Vedova, Giancarlo Mauri:
An Explicit Upper Bound for the Approximation Ratio of the Maximum Gene Regulatory Network Problem.
1-8
- Matthew D. Onsum, Adam P. Arkin:
Autonomous Mobile Robot Control Based on White Blood Cell Chemotaxis.
9-19
- Corrado Priami, Paola Quaglia:
Beta Binders for Biological Interactions.
20-33
- C. Anthony Hunt, Glen E. P. Ropella, Michael S. Roberts, Li Yan:
Biomimetic in Silico Devices.
34-42
- Alexander Bockmayr, Arnaud Courtois, Damien Eveillard, M. Vezain:
Building and Analysing an Integrative Model of HIV-1 RNA Alternative Splicing.
43-57
- Adrien Richard, Jean-Paul Comet, Gilles Bernot:
Graph-Based Modeling of Biological Regulatory Networks: Introduction of Singular States.
58-72
- Denys Chaume, Véronique Giudicelli, Kora Combres, Chantal Ginestoux, Marie-Paule Lefranc:
IMGT-Choreography: Processing of Complex Immunogenetics Knowledge.
73-84
- Radu Mardare, Corrado Priami, Paola Quaglia, Oleksandr Vagin:
Model Checking Biological Systems Described Using Ambient Calculus.
85-103
- Eric Fanchon, Fabien Corblin, Laurent Trilling, Bastien Hermant, Danielle Gulino:
Modeling the Molecular Network Controlling Adhesion Between Human Endothelial Cells: Inference and Simulation Using Constraint Logic Programming.
104-118
- Huma Lodhi, Stephen Muggleton:
Modelling Metabolic Pathways Using Stochastic Logic Programs-Based Ensemble Methods.
119-133
- Vincent Danos, Sylvain Pradalier:
Projective Brane Calculus.
134-148
- Seiya Imoto, Tomoyuki Higuchi, SunYong Kim, Euna Jeong, Satoru Miyano:
Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data.
149-160
- Dietmar Volz, Martin Eigel, Chaitanya Athale, Peter Bastian, Harald Hermann, Constantin Kappel, Roland Eils:
Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells.
161-171
- Nathalie Chabrier-Rivier, François Fages, Sylvain Soliman:
The Biochemical Abstract Machine BIOCHAM.
172-191
- Adelinde Uhrmacher, Daniela Degenring, Jens Lemcke, Mario Krahmer:
Towards Reusing Model Components in Systems Biology.
192-206
- Davide Chiarugi, Michele Curti, Pierpaolo Degano, Roberto Marangoni:
VICE: A VIrtual CEll.
207-220
Short Papers
- Antonio Neme, Pedro Miramontes:
Biological Domain Identification Based in Codon Usage by Means of Rule and Tree Induction.
221-224
- Dragan Bosnacki:
Black Box Checking for Biochemical Networks.
225-230
- Sylvain Soliman, François Fages:
CMBSlib: A Library for Comparing Formalisms and Models of Biological Systems.
231-235
- Jasmin Fisher, David Harel, E. Jane Albert Hubbard, Nir Piterman, Michael J. Stern, Naamah Swerdlin:
Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems.
236-241
- Andrew Finney:
Developing SBML Beyond Level 2: Proposals for Development.
242-247
- Martin Bentele, Roland Eils:
General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells.
248-251
- Florencio Pazos, David Guijas, Manuel J. Gomez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia:
The Biodegradation Network, a New Scenario for Computational Systems Biology Research.
252-256
Invited Contribution
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