1. CompLife 2005: Konstanz, Germany

Michael R. Berthold, Robert C. Glen, Kay Diederichs, Oliver Kohlbacher, Ingrid Fischer (Eds.): Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings. Lecture Notes in Computer Science 3695 Springer 2005, ISBN 3-540-29104-0

Systems Biology

Gihan Dawelbait, Christian Pilarsky, Yanju Zhang, Robert Grützmann, Michael Schroeder:
Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data. 1-11
Eleftherios Panteris, Stephen Swift, Annette Payne, Xiaohui Liu:
Biochemical Pathway Analysis via Signature Mining. 12-23
Ioannis A. Maraziotis, Andrei Dragomir, Anastasios Bezerianos:
Recurrent Neuro-fuzzy Network Models for Reverse Engineering Gene Regulatory Interactions. 24-34

Alexandre Urzhumtsev, Natalia Lunina, Pavel Afonine, Vladimir Y. Lunin:
Some Applications of Dummy Point Scatterers for Phasing in Macromolecular X-Ray Crystallography. 35-45
Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes:
BioRegistry: A Structured Metadata Repository for Bioinformatic Databases. 46-56
Marcus Weber, Susanna Kube:
Robust Perron Cluster Analysis for Various Applications in Computational Life Science. 57-66

Evgeny B. Krissinel, Kim Henrick:
Multiple Alignment of Protein Structures in Three Dimensions. 67-78
Constantin Bannert, Jens Stoye:
Protein Annotation by Secondary Structure Based Alignments (PASSTA). 79-90
Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. 91-103

Jeannette M. de Graaf, Renée X. de Menezes, Judith M. Boer, Walter A. Kosters:
Frequent Itemsets for Genomic Profiling. 104-116
Defeng Wang, Daniel S. Yeung, Eric C. C. Tsang, Lin Shi:
Gene Selection Through Sensitivity Analysis of Support Vector Machines. 117-127
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg:
The Breakpoint Graph in Ciliates. 128-139

Andreas Quandt, Alexander Ploner, Chuen Seng Tan, Janne Lehtiö, Yudi Pawitan:
ProSpect: An R Package for Analyzing SELDI Measurements Identifying Protein Biomarkers. 140-150
Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein:
Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. 151-162
Evgeny B. Krissinel, Kim Henrick:
Detection of Protein Assemblies in Crystals. 163-174

Andreas Bender, Andreas Klamt, Karin Wichmann, Michael Thormann, Robert C. Glen:
Molecular Similarity Searching Using COSMO Screening Charges (COSMO/3PP). 175-185
B. Fischer, Holger Merlitz, Wolfgang Wenzel:
Increasing Diversity in In-silico Screening with Target Flexibility. 186-197
Daniel Baum:
Multiple Semi-flexible 3D Superposition of Drug-Sized Molecules. 198-207

Polina V. Banushkina, Olaf Schenk, Markus Meuwly:
Efficiency Considerations in Solving Smoluchowski Equations for Rough Potentials. 208-216
Markus Bauer, Gunnar W. Klau, Knut Reinert:
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. 217-228
Johannes Schmidt-Ehrenberg, Hans-Christian Hege:
Visual Analysis of Molecular Conformations by Means of a Dynamic Density Mixture Model. 229-240

Micha Bayer, Richard O. Sinnott:
Distributed BLAST in a Grid Computing Context. 241-252
Tatjana Eitrich, Bruno Lang:
Parallel Tuning of Support Vector Machine Learning Parameters for Large and Unbalanced Data Sets. 253-264
Emad Ramadan, Christopher Osgood, Alex Pothen:
The Architecture of a Proteomic Network in the Yeast. 265-276