2. DILS 2005: San Diego, CA, USA

Keynotes

• Shankar Subramaniam:
  Challenges in Biological Data Integration in the Post-genome Sequence Era. 1
  
• Peter Buneman:
  Curated Databases. 2
  

User Applications

• Sarah Cohen Boulakia, Susan B. Davidson, Christine Froidevaux:
  A User-Centric Framework for Accessing Biological Sources and Tools. 3-18
  
• Prabhdeep Singh, R. Bhimavarapu, Hasan Davulcu, Chitta Baral, Seungchan Kim, Huan Liu, Michael L. Bittner, I. V. Ramakrishnan:
  BioLog: A Browser Based Collaboration and Resource Navigation Assistant for BioMedical Researchers. 19-30
  
• Kaushik Sinha, Xuan Zhang, Ruoming Jin, Gagan Agrawal:
  Learning Layouts of Biological Datasets Semi-automatically. 31-45
  

Ontologies

• C. Maria Keet:
  Factors Affecting Ontology Development in Ecology. 46-62
  
• Silke Trißl, Ulf Leser:
  Querying Ontologies in Relational Database Systems. 63-79
  
• Jessie B. Kennedy, Robert Kukla, Trevor Paterson:
  Scientific Names Are Ambiguous as Identifiers for Biological Taxa: Their Context and Definition Are Required for Accurate Data Integration. 80-95
  
• Peter Mork, Ron Shaker, Peter Tarczy-Hornoch:
  The Multiple Roles of Ontologies in the BioMediator Data Integration System. 96-104
  

Data Integration I-IV

• Jaewoo Kang, Jiong Yang, Wanhong Xu, Pankaj Chopra:
  Integrating Heterogeneous Microarray Data Sources Using Correlation Signatures. 105-120
  
• Nam Tran, Chitta Baral, Vinay J. Nagaraj, Lokesh Joshi:
  Knowledge-Based Integrative Framework for Hypothesis Formation in Biochemical Networks. 121-136
  
• Malika Mahoui, Harshad Kulkarni, Nianhua Li, Zina Ben-Miled, Katy Börner:
  Semantic Correspondence in Federated Life Science Data Integration Systems. 137-144
  
• Greeshma Neglur, Robert L. Grossman, Bing Liu:
  Assigning Unique Keys to Chemical Compounds for Data Integration: Some Interesting Counter Examples. 145-157
  
• Emilie Guérin, Gwenaëlle Marquet, Anita Burgun, Olivier Loréal, Laure Berti-Equille, Ulf Leser, Fouzia Moussouni:
  Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW. 158-174
  
• Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar:
  Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. 175-190
  
• Michael Maibaum, Lucas Zamboulis, Galia Rimon, Christine A. Orengo, Nigel J. Martin, Alexandra Poulovassilis:
  Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit. 191-207
  
• Toralf Kirsten, Hong Hai Do, Christine Körner, Erhard Rahm:
  Hybrid Integration of Molecular-Biological Annotation Data. 208-223
  
• Oliver Fiehn, Gert Wohlgemuth, Martin Scholz:
  Setup and Annotation of Metabolomic Experiments by Integrating Biological and Mass Spectrometric Metadata. 224-239
  
• Raymond K. Pon, Terence Critchlow:
  Performance-Oriented Privacy-Preserving Data Integration. 240-256
  

Potpourri

• Stefan Jablonski, Rainer Lay, Sascha Müller, Christian Meiler, Matthias Färber, Victor Derhartunian, Georg Michelson:
  Building a Generic Platform for Medical Screening Applications Based on Domain Specific Modeling and Process Orientation. 257-265
  
• Anne H. H. Ngu, David Buttler, Terence Critchlow:
  Automatic Generation of Data Types for Classification of Deep Web Sources. 266-274
  
• Zoé Lacroix, Kaushal Parekh, Maria-Esther Vidal, Marelis Cardenas, Natalia Marquez:
  BioNavigation: Selecting Optimum Paths Through Biological Resources to Evaluate Ontological Navigational Queries. 275-283
  

Posters and Demonstrations

• Ruey-Lung Hsiao, Douglas Stott Parker Jr., Hung-chih Yang:
  Support for BioIndexing in BLASTgres. 284-287
  
• Rafael Targino, Maria Cláudia Cavalcanti, Marta Mattoso:
  An Environment to Define and Execute In-Silico Workflows Using Web Services. 288-291
  
• George Zheng, Athman Bouguettaya:
  Web Service Mining for Biological Pathway Discovery. 292-295
  
• Zoé Lacroix, Hervé Ménager:
  SemanticBio: Building Conceptual Scientific Workflows over Web Services. 296-299
  
• Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim:
  PLATCOM: Current Status and Plan for the Next Stages. 300-304
  
• Seong Joon Yoo, Min Kyung Kim, Ho Il Lee, Hyun Seok Park:
  SOAP API for Integrating Biological Interaction Databases. 305-308
  
• Chitta Baral, Hasan Davulcu, Mutsumi Nakamura, Prabhdeep Singh, Luis Tari, Lian Yu:
  Collaborative Curation of Data from Bio-medical Texts and Abstracts and Its integration. 309-312
  
• Sergey Krivov, Ferdinando Villa:
  Towards an Ontology Based Visual Query System. 313-316
  

Invited Briefings

• Vadim Astakhov, Amarnath Gupta, Simone Santini, Jeffrey S. Grethe:
  Data Integration in the Biomedical Informatics Research Network (BIRN). 317-320
  
• William Michener, James Beach, Shawn Bowers, Laura L. Downey, Matthew B. Jones, Bertram Ludäscher, Deana Pennington, Arcot Rajasekar, Samantha Romanello, Mark Schildhauer, David Vieglais, Jianting Zhang:
  Data Integration and Workflow Solutions for Ecology. 321-324
  
• Judith Bayard Cushing, Tyrone Wilson:
  Eco-Informatics for Decision Makers Advancing a Research Agenda. 325-334
  
• Mehmet M. Dalkilic:
  An Architecture and Application for Integrating Curation Data at the Residue Level for Proteins. 335-338
  
• Aaron Birkland, Golan Yona:
  The Biozon System for Complex Analysis of Heterogeneous Interrelated Biological Data and Discovery of Emergent Structures. 339-342
  

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