3. DILS 2006: Hinxton, UK

Keynotes

• Victor M. Markowitz:
  An Application Driven Perspective on Biological Data Integration. 1
  
• Sarah E. Knoop:
  Towards a National Healthcare Information Infrastructure. 2
  

Data Integration

• Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer A. Siepen, Andrew C. Jones, Nigel J. Martin, Alexandra Poulovassilis, Simon J. Hubbard, Suzanne M. Embury, Norman W. Paton:
  Data Access and Integration in the ISPIDER Proteomics Grid. 3-18
  
• Erick Antezana, Elena Tsiporkova, Vladimir Mironov, Martin Kuiper:
  A Cell-Cycle Knowledge Integration Framework. 19-34
  
• Petteri Sevon, Lauri Eronen, Petteri Hintsanen, Kimmo Kulovesi, Hannu Toivonen:
  Link Discovery in Graphs Derived from Biological Databases. 35-49
  

Text Mining

• Barbara Gawronska, Björn Erlendsson, Björn Olsson:
  Towards an Automated Analysis of Biomedical Abstracts. 50-65
  
• Tobias Kuhn, Loïc Royer, Norbert E. Fuchs, Michael Schroeder:
  Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions. 66-81
  
• Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes:
  SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies. 82-93
  

Systems I

• Ulrike Wittig, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas:
  SABIO-RK: Integration and Curation of Reaction Kinetics Data. 94-103
  
• Malika Mahoui, Zina Ben-Miled, Sriram Srinivasan, Mindi Dippold, Bing Yang, Nianhua Li:
  SIBIOS Ontology: A Robust Package for the Integration and Pipelining of Bioinformatics Services. 104-113
  
• Sven Mielordt, Ivo Grosse, Jürgen Kleffe:
  Data Structures for Genome Annotation, Alternative Splicing, and Validation. 114-123
  
• Toralf Kirsten, Erhard Rahm:
  BioFuice: Mapping-Based Data Integration in Bioinformatics. 124-135
  

Potpourri

• Vaida Jakoniene, David Rundqvist, Patrick Lambrix:
  A Method for Similarity-Based Grouping of Biological Data. 136-151
  
• Amarnath Gupta, Simone Santini:
  On Querying OBO Ontologies Using a DAG Pattern Query Language. 152-167
  
• Greeshma Neglur, Robert L. Grossman, Natalia Maltsev, Clement T. Yu:
  Using Term Lists and Inverted Files to Improve Search Speed for Metabolic Pathway Databases. 168-184
  

Systems II

• Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig:
  Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. 185-194
  
• Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Down, Robert D. Finn, Stefan Gräf, David K. Jackson, Andreas Kähäri, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim J. P. Hubbard:
  The Distributed Annotation System for Integration of Biological Data. 195-203
  
• Maria Samsonova, Andrei Pisarev, Konstantin Kozlov, Ekaterina Poustelnikova, Arthur Tkachenko:
  An Information Management System for Collaboration Within Distributed Working Environment. 204-215
  

Short Papers

• Zhe Yang, Dalu Zhang, Chuan Ye:
  Ontology Analysis on Complexity and Evolution Based on Conceptual Model. 216-223
  
• Ismael Navas Delgado, Antonio Jesús Pérez, José Francisco Aldana Montes, Oswaldo Trelles:
  Distributed Execution of Workflows in the INB. 224-231
  
• Sascha Losko, Karsten Wenger, Wenzel Kalus, Andrea Ramge, Jens Wiehler, Klaus Heumann:
  Knowledge Networks of Biological and Medical Data: An Exhaustive and Flexible Solution to Model Life Science Domains. 232-239
  
• Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton:
  On Characterising and Identifying Mismatches in Scientific Workflows. 240-247
  

Workflow

• Timothy M. McPhillips, Shawn Bowers, Bertram Ludäscher:
  Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data. 248-263
  
• Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson:
  Towards a Model of Provenance and User Views in Scientific Workflows. 264-279
  
• Dieter Van de Craen, Frank Neven, Kerstin Koch:
  An Extensible Light-Weight XML-Based Monitoring System for Sequence Databases. 280-296
  

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