11. DNA 2005:
London, ON, Canada
Alessandra Carbone, Niles A. Pierce (Eds.):
DNA Computing, 11th International Workshop on DNA Computing, DNA11, London, ON, Canada, June 6-9, 2005. Revised Selected Papers.
Lecture Notes in Computer Science 3892 Springer 2006, ISBN 3-540-34161-7
- Yuliy M. Baryshnikov, Edward G. Coffman Jr., Nadrian C. Seeman, Teddy Yimwadsana:
Self-correcting Self-assembly: Growth Models and the Hammersley Process.
1-11

- Matteo Cavaliere, Natasa Jonoska, Peter Leupold:
Recognizing DNA Splicing.
12-26

- Mark Daley, Ian McQuillan:
On Computational Properties of Template-Guided DNA Recombination.
27-37

- Joseph Farfel, Darko Stefanovic:
Towards Practical Biomolecular Computers Using Microfluidic Deoxyribozyme Logic Gate Networks.
38-54

- Giuditta Franco, Vincenzo Manca, Cinzia Giagulli, Carlo Laudanna:
DNA Recombination by XPCR.
55-66

- Pierluigi Frisco, Christiaan V. Henkel, Szabolcs Tengely:
An Algorithm for SAT Without an Extraction Phase.
67-80

- Max H. Garzon, Vinhthuy T. Phan, Kiran C. Bobba, Raghuver Kontham:
Sensitivity and Capacity of Microarray Encodings.
81-95

- Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg:
Simple Operations for Gene Assembly.
96-111

- Oscar H. Ibarra, Andrei Paun:
Counting Time in Computing with Cells.
112-128

- Oscar H. Ibarra, Sara Woodworth:
On Bounded Symport/Antiport P Systems.
129-143

- Natasa Jonoska, Gregory L. McColm, Ana Staninska:
Expectation and Variance of Self-assembled Graph Structures.
144-157

- Lila Kari, Stavros Konstantinidis, Elena Losseva, Petr Sosík, Gabriel Thierrin:
Hairpin Structures in DNA Words.
158-170

- Atsushi Kijima, Satoshi Kobayashi:
Efficient Algorithm for Testing Structure Freeness of Finite Set of Biomolecular Sequences.
171-180

- Shankara Narayanan Krishna:
Communicating Distributed H Systems: Optimal Results with Efficient Ways of Communication.
181-192

- Junna Kuramochi, Yasubumi Sakakibara:
Intensive In Vitro Experiments of Implementing and Executing Finite Automata in Test Tube.
193-202

- Hirotaka Nakagawa, Kensaku Sakamoto, Yasubumi Sakakibara:
Development of an In Vivo Computer Based on Escherichia coli.
203-212

- Yusuke Ogura, Taro Beppu, Masahiro Takinoue, Akira Suyama, Jun Tanida:
Control of DNA Molecules on a Microscopic Bead Using Optical Techniques for Photonic DNA Memory.
213-223

- Kaoru Onodera, Takashi Yokomori:
Linearizer and Doubler : Two Mappings to Unify Molecular Computing Models Based on DNA Complementarity.
224-235

- Dario Pescini, Daniela Besozzi, Claudio Zandron, Giancarlo Mauri:
Analysis and Simulation of Dynamics in Probabilistic P Systems.
236-247

- Wendy K. Pogozelski, Matthew P. Bernard, Salvatore F. Priore, Anthony J. Macula:
Experimental Validation of DNA Sequences for DNA Computing: Use of a SYBR Green I Assay.
248-256

- John H. Reif, Sudheer Sahu, Peng Yin:
Complexity of Graph Self-assembly in Accretive Systems and Self-destructible Systems.
257-274

- Jennifer A. Sager, Darko Stefanovic:
Designing Nucleotide Sequences for Computation: A Survey of Constraints.
275-289

- Sudheer Sahu, Peng Yin, John H. Reif:
A Self-assembly Model of Time-Dependent Glue Strength.
290-304

- David Soloveichik, Erik Winfree:
Complexity of Compact Proofreading for Self-assembled Patterns.
305-324

- Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata:
A Microfluidic Device for DNA Tile Self-assembly.
325-335

- Keiichiro Takahashi, Satsuki Yaegashi, Hiroyuki Asanuma, Masami Hagiya:
Photo- and Thermoregulation of DNA Nanomachines.
336-346

- Keiichiro Takahashi, Satsuki Yaegashi, Atsushi Kameda, Masami Hagiya:
Chain Reaction Systems Based on Loop Dissociation of DNA.
347-358

- Tsutomu Takeda, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita:
A Local Search Based Barrier Height Estimation Algorithm for DNA Molecular Transitions.
359-370

- Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi:
Specificity of Hybridization Between DNA Sequences Based on Free Energy.
371-379

- Danny van Noort:
A Poor Man's Microfluidic DNA Computer.
380-386

- Bei Wang, Dimitris Papamichail, Steffen Mueller, Steven Skiena:
Two Proteins for the Price of One: The Design of Maximally Compressed Coding Sequences.
387-398

- Peng Yin, Sudheer Sahu, Andrew J. Turberfield, John H. Reif:
Design of Autonomous DNA Cellular Automata.
399-416

- Bernard Yurke, David C. Lin, Noshir A. Langrana:
Use of DNA Nanodevices in Modulating the Mechanical Properties of Polyacrylamide Gels.
417-426

- Byoung-Tak Zhang, Ha-Young Jang:
Molecular Learning of wDNF Formulae.
427-437

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