e-Science 2009: Oxford, UK

Arts, Humanities and Social Science 1

• Joris van Zundert, Douwe Zeldenrust, Anne Beaulieu:
  Alfalab: Construction and Deconstruction of a Digital Humanities Experiment. 1-5
  
• Lutz Maicher, Khalil Ahmed, Alida Isolani, Aki Kivelä, Sam Oh, Antony Pitts, Salvatore Vassallo:
  Topic Maps in the eHumanities. 6-13
  
• Ségolène M. Tarte, David Wallom, Pin Hu, Kang Tang, Tiejun Ma:
  An Image Processing Portal and Web-Service for the Study of Ancient Documents. 14-19
  

Arts, Humanities and Social Science 2

• Donna Kurtz, Greg Parker, David M. Shotton, Graham Klyne, Florian Schroff, Andrew Zisserman, Yorick Wilks:
  CLAROS - Bringing Classical Art to a Global Public. 20-27
  
• Marta Villegas, Carla Parra:
  Integrating Full-Text Search and Linguistic Analyses on Disperse Data for Humanities and Social Sciences Research Projects. 28-32
  
• Mike Jackson, Mario Antonioletti, Alastair C. Hume, Tobias Blanke, Gabriel Bodard, Mark Hedges, Shrija Rajbhandari:
  Building Bridges between Islands of Data - An Investigation into Distributed Data Management in the Humanities. 33-39
  

Arts, Humanities and Social Science 3

• Kia Ng, Eleni Mikroyannidi, Bee Ong, David Giaretta:
  An Ontology Based Framework for the Preservation of Interactive Multimedia Performances. 40-44
  
• Jonas Lindh, Anders Eriksson:
  The SweDat Project and Swedia Database for Phonetic and Acoustic Research. 45-49
  
• Yang Yang, Adrian Osmond, Xiaoyu Chen, Mark J. Weal, Gary Wills, David De Roure, Judith Joseph, Lucy Yardley:
  Supporting the Running and Analysis of Trials of Web-Based Behavioural Interventions: The LifeGuide. 50-57
  

Bioinformatics & Health 1

• Priyank Raj Katariya, Sathish S. Vadhiyar:
  Phylogenetic Predictions on Grids. 58-65
  
• Nathaniel Beagley, Chad Scherrer, Yan Shi, Brian H. Clowers, William F. Danielson, Anuj R. Shah:
  Increasing the Efficiency of Data Storage and Analysis Using Indexed Compression. 66-71
  
• Maurício O. Tsugawa, Andréa M. Matsunaga, José A. B. Fortes:
  User-Level Virtual Network Support for Sky Computing. 72-79
  

Bioinformatics & Health 2

• Pedro Manuel Pinto Ribeiro, Fernando M. A. Silva, Marcus Kaiser:
  Strategies for Network Motifs Discovery. 80-87
  
• Anuj R. Shah, Navdeep Jaitly, Nino Zuljevic, Matthew E. Monroe, Andrei Liyu, Ashoka D. Polpitiya, Joshua N. Adkins, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith, Ian Gorton:
  An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry. 88-93
  
• M. S. Avila-Garcia, Anne E. Trefethen, N. Joshi, F. Gleeson, W. Ba-alawi:
  Sharing and Reusing Cancer Image Segmentation Algorithms Using Scientific Workflows: Pros and Cons. 94-101
  

Climate and Earth Sciences 1

• Nayden Markatchev, Roger Curry, Cameron Kiddle, Andrey Mirtchovski, Rob Simmonds, Tingxi Tan:
  A Cloud-Based Interactive Application Service. 102-109
  
• Kristin Stock, Anne Robertson, Femke Reitsma, Tim Stojanovic, Mohamed Bishr, David Medyckyj-Scott, Jens Ortmann:
  eScience for Sea Science: A Semantic Scientific Knowledge Infrastructure for Marine Scientists. 110-117
  
• Marty Humphrey, Deborah A. Agarwal, Catharine van Ingen:
  Fluxdata.org: Publication and Curation of Shared Scientific Climate and Earth Sciences Data. 118-125
  

Digital Repositories and Data Management 1

• Andreas Hense, Florian Quadt, Matthias Römer:
  Towards a Mobile Workbench for Researchers. 126-131
  
• Manjula Patel, Simon Coles, David Giaretta, Stephen Rankin, Brian McIlwrath:
  The Role of OAIS Representation Information in the Digital Curation of Crystallography Data. 132-139
  
• Kenton McHenry, Rob Kooper, Peter Bajcsy:
  Towards a Universal, Quantifiable, and Scalable File Format Converter. 140-147
  

Digital Repositories and Data Management 2

• Charles Brooking, Stephen R. Shouldice, Gautier Robin, Bostjan Kobe, Jennifer L. Martin, Jane Hunter:
  Comparing METS and OAI-ORE for Encapsulating Scientific Data Products: A Protein Crystallography Case Study. 148-155
  
• Mario Lassnig, Thomas Fahringer, Vincent Garonne, Angelos Molfetas, Miguel Branco:
  Stream Monitoring in Large-Scale Distributed Concealed Environments. 156-163
  
• Adrian Burton, Andrew E. Treloar:
  Publish My Data: A Composition of Services from ANDS and ARCS. 164-170
  

Digital Repositories and Data Management 3

• Brian Matthews, Alastair Duncan, Catherine Jones, Cameron Neylon, Mark Borkum, Simon J. Coles, Philip Hunter:
  A Protocol for Exchanging Scientific Citations. 171-177
  
• Yong Liu, Kailash Kotwani, Alejandro Rodríguez, Joe Futrelle, Robert E. McGrath, James D. Myers:
  Beyond the Document Library: Portal-Based Browsing and Exploration of Community Data Clouds. 178-184
  
• Jewel H. Ward, Antoine de Torcy, Mason Chua, Jonathan Crabtree:
  Extracting and Ingesting DDI Metadata and Digital Objects from a Data Archive into the iRODS Extension of the NARA TPAP Using the OAI-PMH. 185-192
  

Digital Repositories and Data Management 4

• Michal Ondrejcek, Jason Kastner, Rob Kooper, Peter Bajcsy:
  A Methodology for File Relationship Discovery. 193-200
  
• Damian Flannery, Brian Matthews, Tom Griffin, Juan Bicarregui, Michael Gleaves, Laurent Lerusse, Roger Downing, Alun Ashton, Shoaib Sufi, Glen Drinkwater, Kerstin Kleese van Dam:
  ICAT: Integrating Data Infrastructure for Facilities Based Science. 201-207
  
• Xiaoming Gao, Mike Lowe, Yu Ma, Marlon E. Pierce:
  Supporting Cloud Computing with the Virtual Block Store System. 208-215
  

eScience Practice and Education 1

• Chris Morris, Judith Segal:
  Some Challenges Facing Scientific Software Developers: The Case of Molecular Biology. 216-222
  
• Dietmar Sommerfeld, Harald Richter:
  Problems and Approaches of Workflow Scheduling in MediGRID. 223-230
  
• André Merzky, Katerina Stamou, Shantenu Jha, Daniel S. Katz:
  A Fresh Perspective on Developing and Executing DAG-Based Distributed Applications: A Case-Study of SAGA-Based Montage. 231-238
  

Physical Sciences and Engineering 1

• David Abramson, Blair Bethwaite, Minh Ngoc Dinh, Colin Enticott, Stephen Firth, Slavisa Garic, Ian Harper, Martin Lackmann, Hoang Nguyen, Tirath Ramdas, A. B. M. Russel, Stefan Schek, Mary Vail:
  Virtual Microscopy and Analysis Using Scientific Workflows. 239-246
  
• Peer-Timo Bremer, Gunther H. Weber, Julien Tierny, Valerio Pascucci, Marcus S. Day, John B. Bell:
  A Topological Framework for the Interactive Exploration of Large Scale Turbulent Combustion. 247-254
  
• Alexandre di Costanzo, Chao Jin, Carlos A. Varela, Rajkumar Buyya:
  Enabling Computational Steering with an Asynchronous-Iterative Computation Framework. 255-262
  

Physical Sciences and Engineering 2

• Travis J. Desell, Malik Magdon-Ismail, Boleslaw K. Szymanski, Carlos A. Varela, Heidi Jo Newberg, Nathan Cole:
  Robust Asynchronous Optimization for Volunteer Computing Grids. 263-270
  
• Raúl Valín Ferreiro, Natalia Seoane, Manuel Aldegunde, Antonio J. García-Loureiro:
  The MOSFET Virtual Organisation: Grid Computing for Simulation in Nanoelectronics. 271-276
  
• Ian Gorton, Zhenyu Huang, Yousu Chen, Benson Kalahar, Shuangshuang Jin, Daniel G. Chavarría-Miranda, Douglas J. Baxter, John Feo:
  A High-Performance Hybrid Computing Approach to Massive Contingency Analysis in the Power Grid. 277-283
  

Research Tools, Workflow and Systems 1

• Jos Koetsier, Andrew Turner, Patricia Richardson, Jano I. van Hemert:
  Rapid Chemistry Portals through Engaging Researchers. 284-291
  
• Pavel Bar, Camille Coti, Derek Groen, Thomas Hérault, Valentin Kravtsov, Assaf Schuster, Martin T. Swain:
  Running Parallel Applications with Topology-Aware Grid Middleware. 292-299
  
• Sucha Smanchat, Maria Indrawan, Sea Ling, Colin Enticott, David Abramson:
  Scheduling Multiple Parameter Sweep Workflow Instances on the Grid. 300-306
  

Research Tools, Workflow and Systems 2

• Jefferson Tan, David Abramson, Colin Enticott:
  A Virtual Connectivity Layer for Grids. 307-312
  
• Kassian Plankensteiner, Radu Prodan, Thomas Fahringer:
  A New Fault Tolerance Heuristic for Scientific Workflows in Highly Distributed Environments Based on Resubmission Impact. 313-320
  
• Yogesh Simmhan, Catharine van Ingen, Alexander S. Szalay, Roger S. Barga, Jim Heasley:
  Building Reliable Data Pipelines for Managing Community Data Using Scientific Workflows. 321-328
  

Research Tools, Workflow and Systems 3

• Jaliya Ekanayake, Thilina Gunarathne, Geoffrey Fox, Atilla Soner Balkir, Christophe Poulain, Nelson Araujo, Roger S. Barga:
  DryadLINQ for Scientific Analyses. 329-336
  
• Joseph A. Townsend, Jim Downing, Peter Murray-Rust:
  CHIC - Converting Hamburgers into Cows. 337-343
  
• Yolanda Gil, Paul T. Groth, Varun Ratnakar, Christian Fritz:
  Expressive Reusable Workflow Templates. 344-351
  

Research Tools, Workflow and Systems 4

• Nick Day, Jim Downing, Lezan Hawizy, Nico Adams, Peter Murray-Rust:
  Towards Lensfield - Data Management, Processing and Semantic Publication for Vernacular e-Science. 352-357
  
• Emanuele Santos, Julien Tierny, Ayla Khan, Brad Grimm, Lauro Didier Lins, Juliana Freire, Valerio Pascucci, Cláudio T. Silva, Scott Klasky, Roselyne Barreto, Norbert Podhorszki:
  Enabling Advanced Visualization Tools in a Web-Based Simulation Monitoring System. 358-365
  
• Hyunjoo Kim, Yaakoub El Khamra, Shantenu Jha, Manish Parashar:
  An Autonomic Approach to Integrated HPC Grid and Cloud Usage. 366-373
  

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