28. HICSS 1995: Maui, Hawaii, USA - Volume 5

Project-Oriented Databases and Knowledge Bases in Genome Research

• S. W. Thomas, Elke A. Rundensteiner, Amy J. Lee:
  Visualization and database tools for YAC and cosmid contig construction. 4-13
  
• Tom Slezak, Mark Wagner, Mimi Yeh, Linda Ashworth, David Nelson, David Ow, Elbert Branscomb, Anthony Carrano:
  A database system for constructing, integrating, and displaying physical maps of chromosome 19. 14-23
  
• Darren M. Platt, Trevor I. Dix:
  A model for comparing genomic restriction maps. 24-31
  
• Mark Graves, Ellen R. Bergeman, Charles B. Lawrence:
  A graph-theoretic data model for genome mapping databases. 32-41
  
• O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov:
  Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes. 42-51
  
• Elizabeth Shoop, Ed Huai-hsin Chi, John V. Carlis, Paul Bieganski, John Riedl, Neal Dalton, Thomas Newman, Ernest Retzel:
  Implementation and testing of an automated EST processing and similarity analysis system. 52-61
  
• Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison:
  A database for globin gene expression data. 62-71
  
• Hajime Kitakami, Tadasu Shin-I, Kazuho Ikeo, Yoshihiro Ugawa, Naruya Saitou, Takashi Gojobori, Yoshio Tateno:
  YAMATO and ASUKA: DNA database management system. 72-80
  
• Dong-Guk Shin:
  Comparative study of relational and object-oriented modelings of genomic data. 81-90
  
• Hugues Ripoche, Jean Sallantin:
  Knowledge discovery in a genetic database: the MINOS system. 91-
  

Computational Biology and Parallel Computing

• Roger D. Chamberlain, Gregory D. Peterson, Mark A. Franklin, Michael A. Province:
  Genetic epidemiology, parallel algorithms, and workstation networks. 101-111
  
• Mikhail G. Karpoukhin, Boris Y. Kogan, Walter J. Karplus:
  The application of a massively parallel computer to the simulation of electrical wave propagation phenomena in the heart muscle using simplified models. 112-122
  
• John S. Conery, Warner L. Peticolas, Thomas Rush III, Kesavan Shanmugam, Jose Dominguez:
  A parallel algorithm for calculating the potential energy in DNA. 123-131
  
• J. A. Lupo:
  Benchmarking UHGROMOS. 132-141
  
• Robert Haacke, B. Montgomery Pettitt:
  The scaling of molecular dynamics on the KSR1. 142-
  

Stochastic Models and Grammars for Bioinformatics

• Darren M. Platt, Trevor I. Dix:
  Stochastic assembly of contig restriction maps. 155-164
  
• Fengrong Ren, Hiroshi Tanaka, Noria Fukuda, Takashi Gojobori:
  Molecular evolutionary phylogenetic trees based on minimum description length principle. 165-173
  
• Minoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya:
  A combination of a functional motif model and a structural motif model for a database validation. 174-183
  
• Marcella A. McClure, Rajasekhar Raman:
  Parameterization studies of hidden Markov models representing highly divergent protein sequences. 184-196
  
• Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa:
  New hashing techniques and their application to a protein structure database system. 197-206
  
• Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne:
  Design and use of a software framework to obtain information derived from macromolecular structure data. 207-216
  
• Janice I. Glasgow, Suzanne Fortier, Darrell Conklin:
  Knowledge representation tools for molecular scene analysis. 217-226
  
• Wolf-Dietrich Ihlenfeldt, Yoshimasa Takahashi, Hidetsugu Abe:
  Dataflow processing in a global networked context: a solution for the computational methods pool management problem. 227-236
  
• A. V. Dzyabchenko, Valery N. Agafonov:
  Computer-aided design of crystalline drugs. 237-245
  
• Gordon M. Crippen:
  Intervals and the deduction of drug binding site models. 246-255
  
• Herbert Edelsbrunner, Michael A. Facello, Ping Fu, Jie Liang:
  Measuring proteins and voids in proteins. 256-264
  
• Michael Teschner, Christian Henn:
  Mapping volumetric properties on molecular surfaces in real-time. 265-272
  
• Jürgen Brickmann, Wolfgang Heiden, Horst Vollhardt, Carl-Dieter Zachmann:
  New man-machine communication strategies in molecular modelling. 273-
  

Protein Structure Prediction

• Valentina Di Francesco, Peter J. Munson, Jean Garnier:
  Use of multiple alignments in protein secondary structure prediction. 285-291
  
• Gilbert Deléage, Christophe Geourjon:
  Intensive sequence comparisons to predict protein secondary structures. Integration into a software package: ANTHEPROT. 292-301
  
• Robert B. Russell, R. R. Copley, Geoffrey J. Barton:
  Protein fold recognition from secondary structure assignments. 302-311
  
• Zhirong Sun, Tom L. Blundell:
  The pattern of common supersecondary structure (motifs) in protein database. 312-318
  
• Gordon M. Crippen:
  Protein folding potential functions. 319-324
  
• E. Platt, Barry Robson:
  Practical use of a fully automatic homology-based protein modelling protocol. 325-334
  

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