7. ISBRA 2011: Changsha, China

• Russell Schwartz:
  Phylogenetics of Heterogeneous Samples - (Keynote Talk). 1
  
• David Sankoff:
  OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk). 2-3
  
• Bernard M. E. Moret:
  Phylogenetic Analysis of Whole Genomes - (Keynote Talk). 4-7
  
• Liping Wei:
  Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications - (Keynote Talk). 8-10
  
• Eric P. Xing:
  Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach - (Keynote Talk). 11
  
• Jun Ren, Jianxin Wang, Min Li, Huan Wang, Binbin Liu:
  Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information. 12-24
  
• Fei Guo, Lusheng Wang:
  Computing the Protein Binding Sites. 25-36
  
• David Hoksza, Daniel Svozil:
  SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm. 37-48
  
• Yu-Cheng Liu, Po-I. Chiu, Hsuan-Cheng Huang, Vincent S. Tseng:
  Prediction of Essential Genes by Mining Gene Ontology Semantics. 49-60
  
• Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu:
  High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs. 61-72
  
• Ghada Badr, Marcel Turcotte:
  Component-Based Matching for Multiple Interacting RNA Sequences. 73-86
  
• Huan Wang, Min Li, Jianxin Wang, Yi Pan:
  A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient. 87-98
  
• Chunfang Zheng, David Sankoff:
  Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes. 99-110
  
• Luqman Hodgkinson, Richard M. Karp:
  Algorithms to Detect Multiprotein Modularity Conserved during Evolution. 111-122
  
• Krister M. Swenson, Eric Chen, Nicholas D. Pattengale, David Sankoff:
  The Kernel of Maximum Agreement Subtrees. 123-135
  
• Jian-Yi Yang, Xin Chen:
  A Consensus Approach to Predicting Protein Contact Map via Logistic Regression. 136-147
  
• Pawel Górecki, Oliver Eulenstein:
  A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees. 148-159
  
• Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano:
  Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation. 160-171
  
• Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein:
  The Deep Coalescence Consensus Tree Problem is Pareto on Clusters. 172-183
  
• Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca:
  Fast Local Search for Unrooted Robinson-Foulds Supertrees. 184-196
  
• Yu Lin, Vaibhav Rajan, Bernard M. E. Moret:
  A Metric for Phylogenetic Trees Based on Matching. 197-208
  
• Pavol Jancura, Eleftheria Mavridou, Beatriz Pontes, Elena Marchiori:
  Describing the Orthology Signal in a PPI Network at a Functional, Complex Level. 209-226
  
• Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein:
  Algorithms for Rapid Error Correction for the Gene Duplication Problem. 227-239
  
• Yi-Tsung Tang, Hung-Yu Kao:
  TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction Prediction. 240-252
  
• Hui Li, Lauren Scott, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland:
  Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach. 253-261
  
• Vadim Mozhayskiy, Ilias Tagkopoulos:
  In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer. 262-273
  
• Jirí Kléma, Matej Holec, Filip Zelezný, Jakub Tolar:
  Comparative Evaluation of Set-Level Techniques in Microarray Classification. 274-285
  
• Pingzhao Hu, Shelley B. Bull, Hui Jiang:
  Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression Data. 286-296
  
• Bin Fu, Louxin Zhang:
  A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance. 297-305
  
• John D. Eblen, Charles A. Phillips, Gary L. Rogers, Michael A. Langston:
  The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations. 306-319
  
• Yan Fu, Rong Pan, Qiang Yang, Wen Gao:
  Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction. 320-331
  
• Chaojun Li, Jieyue He, Baoliu Ye, Wei Zhong:
  A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks. 332-343
  
• Xiuwei Zhang, Bernard M. E. Moret:
  ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks. 344-357
  
• Andrea Szabóová, Ondrej Kuzelka, Sergio Morales E., Filip Zelezný, Jakub Tolar:
  Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram Method. 358-367
  
• Jonathan Q. Jiang:
  Multi-label Correlated Semi-supervised Learning for Protein Function Prediction. 368-379
  
• Felipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido, Maria Emilia Telles Walter:
  Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA. 380-391
  
• Marius Nicolae, Ion I. Mandoiu:
  Accurate Estimation of Gene Expression Levels from DGE Sequencing Data. 392-403
  
• Han Wang, John Fazekas, Matthew Booth, Qi Liu, Dongsheng Che:
  An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes. 404-415
  
• Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston:
  A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract). 416-427
  
• Wen-Chieh Chang, Sudheer Vakati, Roland Krause, Oliver Eulenstein:
  Mining Biological Interaction Networks Using Weighted Quasi-Bicliques. 428-439
  
• Ján Manuch, Murray Patterson, Arvind Gupta:
  Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees. 440-451
  

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