2. ISMB 1994:
Stanford, California, USA
Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls (Eds.):
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA.
AAAI 1994, ISBN 0-929280-68-7 
- Pankaj Agarwal, David J. States:
The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome.
1-9
- Russ B. Altman, Bryn Weiser, Harry F. Noller:
Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA.
10-18
- Russ B. Altman, Mark Gerstein:
Finding an Average Core Structure: Application to the Globins.
19-27
- Timothy L. Bailey, Charles Elkan:
Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer.
28-36
- Ethan Benatan:
An Intelligent System for Comparing Protein Structures.
37-43
- Steven E. Brenner, Alan Berry:
Protein Design by Optimization of a Sequence-Structure Quality Function.
44-52
- Philipp Bucher, Amos Bairoch:
A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation.
53-61
- Christian Burks, Rebecca J. Parsons, Michael L. Engle:
Integration of Competing Ancillary Assertions in Genome Assembly.
62-69
- Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne:
Design and Application of a C++ Macromolecular Class Library.
70-77
- Dominic A. Clark, Christopher J. Rawlings, Sylvie Doursenot:
Genetic Map Construction with Constraints.
78-86
- Dawn M. Cohen, Kumar Vadaparty, Bill Dickinson, Hemanth Salem:
VQLM: A Visual Query Language for Macromolecular Structural Databases.
87-95
- Darrell Conklin, Suzanne Fortier, Janice I. Glasgow:
Knowledge Discovery of Multilevel Protein Motifs.
96-102
- Zhan Cui:
Using Interval Logic for Order Assembly.
103-111
- Trevor I. Dix, Chut N. Yee:
A Restriction Mapping Engine Using Constraint Logic Programming.
112-120
- Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya:
Stochastic Motif Extraction Using Hidden Markov Model.
121-129
- Terry Gaasterland, Natalia Maltsev, Jorge Lobo, Guo-Hua Chen:
Assigning Function to CDS Through Qualified Query Answering: Beyond Alignment and Motifs.
130-137
- Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, Harry Noller:
RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars.
138-146
- Carole D. Hafner, Kenneth Baclawski, Robert P. Futrelle, Natalya Fridman Noy, Shobana Sampath:
Creating a Knowledge Base of Biological Research Papers.
147-155
- Simon Handley:
The Prediction of the Degree of Exposure to Solvent of Amino Acid Residues Via Genetic Programming.
156-160
- Eric Harley, Anthony J. Bonner:
A Flexible Approach to Genome Map Assembly.
161-169
- Catherine Hearne, Zhan Cui, Simon Parsons, Saki Hajnal:
Prototyping a Genetics Deductive Database .
170-178
- Daniel N. Hennessy, Vanathi Gopalakrishnan, Bruce G. Buchanan, John M. Rosenberg, Devika Subramanian:
Induction of Rules for Biological Macromolecular Crystallization.
179-187
- John M. Heumann, Alan S. Lapedes, Gary D. Stormo:
Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites.
188-194
- James L. Holloway, Paul Cull:
Aligning Genomes with Inversions and Swaps.
195-202
- Peter D. Karp, Suzanne M. Paley:
Representations of Metabolic Knowledge: Pathways.
203-211
- Jin Kim, Sakti Pramanik:
An Efficient Method for Multiple Sequence Alignment.
212-218
- Ross D. King, Dominic A. Clark, Jack Shirazi, Michael J. E. Sternberg:
Inductive Logic Programming Used to Discover Topological Constraints in Protein Structures.
219-226
- Hajime Kitakami, Yoshio Tateno, Takashi Gojobori:
Toward Unification of Taxonomy Databases in a Distributed Environment.
227-235
- Tod M. Klingler, Douglas L. Brutlag:
Discovering Side-Chain Correlations In alpha-Helices.
236-243
- John R. Koza:
Evolution of a Computer Program for Classifying Protein Segments as Transmembrane Domains Using Genetic Programming.
244-252
- Cathie LeBlanc, Charles R. Katholi, Thomas R. Unnasch, Susan I. Hruska:
DNA Sequence Analysis Using Hierarchical ART-based Classification Network.
253-260
- Laurence Leherte, Kim Baxter, Janice I. Glasgow, Suzanne Fortier:
Segmentation and Interpretation of 3D Protein Images.
261-268
- Eric Lemoine, Joël Quinqueton, Jean Sallantin:
High Speed Pattern Matching in Genetic Data Base with Reconfigurable Hardware.
269-275
- Hiroshi Mamitsuka, Naoki Abe:
Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars.
276-284
- Dinesh Manocha, Yunshan Zhu:
Kinematic Manipulation of Molecular Chains Subject to Rigid Constraint.
285-293
- Michael L. Mavrovouniotis:
Describing Multiple Levels of Abstraction in the Metabolism.
294-302
- Aleksandar Milosavljevic:
Sequence Comparisons via Algorithmic Mutual Information.
303-309
- Joseph Norman:
Flow Cytometry Data Analysis: Comparing Large Multivariate Data Sets Using Classification Trees.
310-313
- Kentaro Onizuka, Masayuki Akahosi, Masato Ishikawa, Kiyoshi Asai:
The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein.
314-321
- David Parsons, John F. Canny:
Geometric Problems in Molecular Biology and Robotics.
322-330
- Dhiraj K. Pathak, Eric P. Hoffman, Mark W. Perlin:
Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers.
331-339
- Foster J. Provost, Daniel N. Hennessy:
Distributed Machine Learning: Scaling Up with Coarse-grained Parallelism.
340-347
- Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander:
GeneQuiz: A Workbench for Sequence Analysis.
348-353
- Victor V. Solovyev, Asaf A. Salamov, Charles B. Lawrence:
The Prediction of Human Exons By Oligonucleotide Composition and Disriminant Analysis of Spliceable Open Reading Frames.
354-362
- Erik L. L. Sonnhammer, Richard Durbin:
An Expert System for Processing Sequence Homology Data.
363-368
- Gary D. Stormo, David Haussler:
Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence.
369-375
- Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher:
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence.
376-
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