3. ISMB 1995:
Cambridge, United Kingdom
Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak (Eds.):
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995.
AAAI 1995, ISBN 0-929280-83-0 
- Friedrich Ackermann, Grit Herrmann, Franz Kummert, Stefan Posch, Gerhard Sagerer, Dietmar Schomburg:
Protein Docking: Combining Symbolic Descriptions of Molecular Surfaces and Grid-Based Scoring Functions.
3-11
- Steven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman:
Characterizing Oriented Protein Structural Sites Using Biochemical Properties.
12-20
- Timothy L. Bailey, Charles Elkan:
The Value of Prior Knowledge in Discovering Motifs with MEME.
21-29
- Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh:
Periodic Sequence Patterns in Human Exons.
30-38
- Pierre Baldi, Yves Chauvin:
Protein Modeling with Hybrid Hidden Markov Model/Neural Network Architectures.
39-47
- Ellen R. Bergeman, Mark Graves, Charles B. Lawrence:
Viewing Genome Data as Objects for Application Development.
48-56
- Gilles Bisson, Alain Garreau:
APIC : A Generic Interface for Sequencing Projects.
57-65
- Steven E. Brenner, Tim J. P. Hubbard:
A Specification for Defining and Annotating Regions of Macromolecular Structures.
66-74
- Robert B. Cary, Gary D. Stormo:
Graph-Theoretic Approach to RNA Modeling Using Comparative Data.
75-80
- Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli:
Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks.
81-88
- Denise E. Cooke, John E. Hunt:
Recognising Promoter Sequences Using An Artificial Immune System.
89-97
- Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher:
Predicting Protein Folding Classes without Overly Relying on Homology.
98-106
- Andreas W. M. Dress, Georg Füllen, Sören Perrey:
A Divide and Conquer Approach to Multiple Alignment.
107-113
- Sean R. Eddy:
Multiple Alignment Using Hidden Markov Models.
114-120
- Marielle Foucrault, François Major:
Symbolic Generation and Clustering of RNA 3-D Motifs.
121-126
- Terry Gaasterland, Evgeni Selkov:
Reconstruction of Metabolic Networks Using Incomplete Information.
127-135
- Leslie Grate:
Automatic RNA Secondary Structure Determination with Stochastic Context-Free Grammars.
136-144
- J. Alicia Grice, Richard Hughey, Don Speck:
Parallel Sequence Alignment in Limited Space.
145-153
- Tal Grossman, Robert M. Farber, Alan S. Lapedes:
Neural Net Representations of Empirical Protein Potentials.
154-161
- Simon Handley:
Classifying Nucleic Acid Sub-Sequences as Introns or Exons Using Genetic Programming.
162-169
- Klemens Hemm, Karl Aberer, Manfred Hendlich:
Constituting a Receptor-Ligand Information Base from Quality-Enriched Data.
170-178
- Liisa Holm, Chris Sander:
3-D Lookup: Fast Protein Structure Database Searches at 90% Reliability.
179-187
- Kevin Karplus:
Evaluating Regularizers for Estimating Distributions of Amino Acids.
188-196
- Alexander E. Kel, Y. V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov:
Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences.
197-205
- Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov:
Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application.
206-214
- Anders Krogh, Graeme J. Mitchison:
Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA.
215-221
- Fabrice Lefebvre:
An Optimized Parsing Algorithm Well Suited to RNA Folding.
222-230
- Scott Leishman, Peter M. D. Gray, John E. Fothergill:
A Constraint-Based Assignment System for Automating Long Side Chain Assignments in Protein 2D NMR Spectra.
231-239
- Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik:
Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids.
240-248
- Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin:
Cooperative Computer System For Genome Sequence Analysis.
249-258
- Hitomi Ohkawa, James Ostell, Stephen H. Bryant:
MMDB: An ASN.1 Specification for Macromolecular Structure.
259-267
- Simon Parsons:
Softening Constraints in Constraint-Based Protein Topology Prediction.
268-276
- Rebecca Parsons, Mark E. Johnson:
DNA Sequence Assembly and Genetic Algorithms - New Results and Puzzling Insights.
277-284
- William R. Pearson, Gabriel Robins, Dallas E. Wrege, Tongtong Zhang:
A New Approach to Primer Selection in Polymerase Chain Reaction Experiments.
285-291
- Anders Gorm Pedersen, Jacob Engelbrecht:
Investigations of Escherichia coli Promoter Sequences with Artificial Neural Networks: New Signals Discovered Upstream of the Transcriptional Startpoint.
292-299
- Matthias Rarey, Bernd Kramer, Thomas Lengauer:
Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins.
300-308
- Igor B. Rogozin, Galina V. Glazko, Evgeniy I. Latkin:
Subclass Approach for Mutational Spectrum Analysis.
309-313
- Burkhard Rost:
TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures.
314-321
- Marie-France Sagot, Alain Viari, Henry Soldano:
A Distance-Based Block Searching Algorithm.
322-331
- Olivier Schmeltzer:
Using Temporal Reasoning for Genome Map Assembly.
332-340
- David B. Searls, Kevin P. Murphy:
Automata-Theoretic Models of Mutation and Alignment.
341-349
- Thomas Seidl, Hans-Peter Kriegel:
Solvent Accessible Surface Representation in a Database System for Protein Docking.
350-358
- Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara:
BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences.
359-366
- Victor V. Solovyev, Asaf A. Salamov, Charles B. Lawrence:
Identification of Human Gene Structure Using Linear Discriminant Functions and Dynamic Programming.
367-375
- Michael J. E. Sternberg, Hedvig Hegyi, Suhail A. Islam, Jingchu Luo, Robert B. Russell:
Towards an Intelligent System for the Automatic Assignment of Domains in Globular Proteins.
376-383
- Ralf Thiele, Ralf Zimmer, Thomas Lengauer:
Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment.
384-392
- Michael J. Wise:
Neweyes: A System for Comparing Biological Sequences Using the Running Karp-Rabin Greedy String-Tiling Algorithm.
393-401
- Thomas D. Wu, Douglas L. Brutlag:
Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques.
402-410
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