7. ISMB 1999:
Heidelberg, Germany
Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer (Eds.):
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany.
AAAI 1999, ISBN 1-57735-083-9
- Alan Ableson, Janice I. Glasgow:
Crystallographic Threading.
2-9

- Viatcheslav R. Akmaev, Scott T. Kelley, Gary D. Stormo:
A Phylogenetic Approach to RNA Structure Prediction.
10-17

- Thomas S. Anantharaman, Bud Mishra, David C. Schwartz:
Genomics via Optical Mapping III: Contiging Genomic DNA.
18-27

- Miguel A. Andrade:
Position-Specific Annotation of Protein Function Based on Multiple Homologs.
28-33

- Mihael Ankerst, Gabi Kastenmüller, Hans-Peter Kriegel, Thomas Seidl:
Nearest Neighbor Classification in 3D Protein Databases.
34-43

- Gary Benson, Lan Dong:
Reconstructing the Duplication History of a Tandem Repeat.
44-53

- Thomas W. Blackwell, Eric C. Rouchka, David J. States:
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions.
54-59

- Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia:
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions.
60-67

- Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli:
A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion.
68-76

- Mark Craven, Johan Kumlien:
Constructing Biological Knowledge Bases by Extracting Information from Text Sources.
77-86

- Karen Eilbeck, Andy Brass, Norman W. Paton, Charlie Hodgman:
INTERACT: An Object Oriented Protein-Protein Interaction Database.
87-94

- Jan Gorodkin, Ole Lund, Claus A. F. Andersen, Søren Brunak:
Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints.
95-105

- Janet Grassmann, Martin Reczko, Sándor Suhai, Lutz Edler:
Protein Fold Class Prediction: New Methods of Statistical Classification.
106-112

- Earl Hubbell, Pavel A. Pevzner:
Fidelity Probes for DNA Arrays.
113-117

- Daniel H. Huson, Lisa Vawter, Tandy Warnow:
Solving Large Scale Phylogenetic Problems using DCM2.
118-129

- Thomas R. Ioerger, Thomas Holton, Jon A. Christopher, James C. Sacchettini:
TEXTAL: A Pattern Recognition System for Interpreting Electron Density Maps.
130-137

- Christian Iseli, C. Victor Jongeneel, Philipp Bucher:
ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences.
138-148

- Tommi Jaakkola, Mark Diekhans, David Haussler:
Using the Fisher Kernel Method to Detect Remote Protein Homologies.
149-158

- Richard M. Karp, Itsik Pe'er, Ron Shamir:
An Algorithm Combining Discrete and Continuous Methods for Optical Mapping.
159-168

- Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson:
Multiple Structural Alignment and Core Detection by Geometric Hashing.
169-177

- Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen:
Metrics and Similarity Measures for Hidden Markov Models.
178-186

- Peter A. Meric, Michael J. Wise:
Quantitative, Scalable Discrete-Event Simulation of Metabolic Pathways.
187-194

- Ekaterina Myasnikova, David Kosman, John Reinitz, Maria Samsonova:
Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes.
195-201

- Gene Myers:
A Dataset Generator for Whole Genome Shotgun Sequencing.
202-210

- Rolf Olsen, Ralf Bundschuh, Terence Hwa:
Rapid Assessment of Extremal Statistics for Gapped Local Alignment.
211-222

- Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida:
Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes.
223-233

- Walter L. Ruzzo, Martin Tompa:
A Linear Time Algorithm for Finding All Maximal Scoring Subsequences.
234-241

- Volker Schnecke, Leslie A. Kuhn:
Database Screening for HIV Protease Ligands: The Influence of Binding-Site Conformation and Representation on Ligand Selectivity.
242-251

- Amit Pal Singh, Jean-Claude Latombe, Douglas L. Brutlag:
A Motion Planning Approach to Flexible Ligand Binding.
252-261

- Martin Tompa:
An Exact Method for Finding Short Motifs in Sequences, with Application to the Ribosome Binding Site Problem.
262-271

- Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz:
Seamless Integration of Biological Applications within a Database Framework.
272-281

- Michael G. Walker, Wayne Volkmuth, Tod M. Klingler:
Pharmaceutical Target Discovery Using Guilt-by-Association: Schizophrenia and Parkinson's Disease Genes.
282-286

- Poe Xing, Casimir A. Kulikowski, Ilya B. Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, Manfred Zorn:
Analysis of Ribosomal RNA Sequences by Combinatorial Clustering.
287-296

- Jun Zhu, Roland Lüthy, Charles E. Lawrence:
Database Search Based on Bayesian Alignment.
297-305

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