5. JBI 2004:
Barcelona,
Catalonia,
Spain
Xavier Messeguer, Gabriel Valiente (Eds.):
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004.
Technical University of Catalonia, Barcelona 2004, ISBN 84-7653-863-4 
Functional Analysis
- Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo:
New Challenges in Gene Expression Data Analysis and the Extended GEPAS.
1-5
- Paul Kellam, Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel J. Martin, Christine A. Orengo, Xiaohui Liu:
Consensus Clustering and Functional Interpretation of Gene Expression Data.
6
- Albert Sorribas, Ester Vilaprinyó:
Bridging the Gap between Gene Expression and Physiological Phenotype: Is there still Room for Kinetic Models?
7-11
Structural Analysis and Modelling
Comparative Genomics
Molecular Evolution
Biomedical Informatics
Computational Methods
Sequence Analysis
Posters
- Damián López, Antonio Cano, Manuel Vazquez de Parga, Belén Calles, José M. Sempere, Tomás Pérez, José Ruiz, Pedro García:
Detection of Functional Motifs in Biosequences: A Grammatical Inference Approach.
72-75
- Marta Bueno, Jesus Tejero, Javier Sancho:
The Long and Short Flavodoxins: Evolutionary Origin and Role of the Differentiating Loop in Apoflavodoxin Structure.
76-79
- Carlos Prieto, Alberto de Luis, Javier De Las Rivas:
Integration and Comparison of Interactome Databases.
80-83
- Juan José Lozano, Susana G. Kalko:
AMarge: Automated Extensive Quality Assessment of Affymetrix Chips.
84-86
- Ferran Reverter, Esteban Vegas:
Kernel-Based Fisher Discriminant Analysis for Microarray Data.
87-91
- Leonardo Arbiza, Joaquín Dopazo, Hernán Dopazo:
Infering Non-Neutral Evolution within the Context of a Growing Genomic Framework: Preliminary Results using Human-Chimp Proteomes.
92-99
- Pablo Marín-García, Heikki Lehväslaiho:
MutRes and LsdbRes: A Bioinformatics Platform for Mutation Databases.
100
- José Santos:
Codon Based Amino Acid Encoding for the Neural Network Prediction of Protein Secondary Structure.
101-106
- Mireia Vilardell, Alex Sánchez:
The Gene Identification Problem from a Hypotheses Test Perspective.
107-112
- Carlos Morcillo-Suarez, Josep Alegre, Marc Esteve, Jaume Bertranpetit, Francesc Calafell, Arcadi Navarro:
A Web-Based Utility for High-Throughput SNP Data Analysis.
113
- David Talavera, Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz:
Comparative Study of MAPK 9 Alternative Splicing from Human and Mouse.
114-117
- Tomàs Marquès-Bonet, Oscar Lao, Robert Goertsches, Manuel Comabella, Xavier Montalban, Arcadi Navarro:
A Tool for Heuristic Detection of Association Clusters in Whole-Genome Scans.
118
- Sergio Lois, Xavier de la Cruz:
A Bioinformatic Approach to the Comparative Study of Human and Mouse Proteomes.
119-121
- Itizar Frades, Richard J. Edwards, Denis C. Shields:
Investigating the 3D Conformation of N-Terminally Constrained Oligopeptides.
122-123
- David Piedra, Miquel Calvo, Xavier de la Cruz:
A Study of the Impact of Sequence Variability in Protein Cavities.
124-127
- Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz:
Annotation of Non-Human Pathological Mutations utilising Human-Parameterised Neural Networks.
128-131
- Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo:
Highly Specific and Accurate Selection of siRNAs for High-Throughput Functional Assays.
132-136
- Sònia Casillas, Natalia Petit, Raquel Egea, Antonio Barbadilla:
Storage, Representation and Analysis of Nucleotide Polymorphism.
137-141
- Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
On Supertrees of Phylogenetic Trees.
142-145
- Alberto de Luis, Javier De Las Rivas:
Investigating the Assignment of Probes to Transcripts in Affymetrix Microarrays.
146-147
- Ricardo Alberich, Jairo Rocha:
New Relations in the Edge Ideal Metrics Family for Biopolymers.
148-153
- Borys Wróbel, Rafael Sanjuán, Andrés Moya, Fernando González-Candelas:
The Use of Weighted Least Squares Test Statistic in Branch and Topology Testing.
154-156
- Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo:
Finding SNPs with Putative Phenotypic Effect at Transcriptional Level.
157-160
- Álvaro Mateos, Joaquín Dopazo:
An Approach to the Modular Structure of Cancer.
161-165
- José María Fernández, Alfonso Valencia:
XML Databases, are Ready for Bioinformatics?
166-170
- Domènec Farré, David García, M. Mar Albà, Xavier Messeguer:
Prediction of Transcription Factor Binding Sites with PROMO v.3: Improving the Specificity of Weight Matrices and the Searching Process.
171-172
- Ramón Díaz-Uriarte, David Casado:
Can we Find Molecular Signatures from Gene Expression Data?
173-178
- Jorge Estrada, Marta Bueno, Adrián Velázquez, Nunilo Cremades, Javier Sancho:
Virtual Screening of Small Molecules Binding to an Engineered Protein Cavity in Flavodoxin using Freely Available Docking Software.
179-181
- Giulio Marcon, Nicola Cannata, Mercè Llabrés, Marta Simeoni, Giorgio Valle:
Ordering BAC Clones from Fingerprint Data obtained through Four Enzymes Digestion and Fluorescent Labeling.
182-190
- Raquel Tobes, Eduardo Pareja:
Repetitive Extragenic Palindromic Sequences in Pseudomonas syringae pv.\ tomato DC3000 Genome.
191-193
- Juanjo Lozano, David Otero, Belén Miñana, Eva González, Lauro Sumoy:
A Web Based Suite of Tools for Microarray Quality Control and Data Analysis.
194-195
- Eduardo López-Viñas, Antonio G. Cordente, Montserrat Morillas, Fausto G. Hegardt, Paulino Gómez-Puertas:
Bioinformatic Analysis of Functional Characteristics of Enzymatic Active Centres using both Sequence and Structure Information: An Application to the Carnitine/Choline Acyltransferases Protein Family.
196-203
- Jesús Villajos, Angel R. Ortiz:
Fold Recognition using Residual Dipolar Couplings.
204
- Antoni Valencia, Martín Pérez, Adam Hospital, Joan Carles Fernández, Elena Manresa, Robert Soliva, Josep Lluis Gelpí, Modesto Orozco:
Comparison of Active Centers of Proteins: The Kinesin Family as a Test Case.
205
- Antonio Morreale, Xavier de la Cruz, Tim Meyer, Josep Lluis Gelpí, F. Javier Luque, Modesto Orozco:
Hydration Free Energy in Macromolecules.
206-207
- Xavier Solé, Raquel Iniesta, Elisabet Guinó, Joan Valls, Víctor Moreno:
Assessment of Genetic Association using Haplotypes Inferred with Uncertainty.
208-210
- Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Montserrat Robles, Manuel Talón:
Blast2GO: A Universal Annotation and Visualization Tool for Functional Genomics Research.
211
- Ana Conesa, María José Nueda, Alberto Ferrer, Manuel Talón:
maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments.
212
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