PACBB 2012: Salamanca, Spain

• Sandrine Mouysset, Ronan Guivarch, Joseph Noailles, Daniel Ruiz:
  Parallel Spectral Clustering for the Segmentation of cDNA Microarray Images. 1-9
  
• André Valério Carreiro, Artur J. Ferreira, Mário A. T. Figueiredo, Sara C. Madeira:
  Prognostic Prediction Using Clinical Expression Time Series: Towards a Supervised Learning Approach Based on Meta-biclusters. 11-20
  
• Filipe Cristóvão, Sara C. Madeira:
  Parallel e-CCC-Biclustering: Mining Approximate Temporal Patterns in Gene Expression Time Series Using Parallel Biclustering. 21-31
  
• Carmen Maria Livi, Luc Paillard, Enrico Blanzieri, Yann Audic:
  Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs. 33-41
  
• Paulo Gaspar, Jaime Carbonell, José Luís Oliveira:
  Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines. 43-51
  
• Diego Calvo-Dmgz, Juan F. Gálvez, Daniel Glez-Peña, Florentino Fdez-Riverola:
  Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory. 53-61
  
• Jesus Bisbal, Gerhard Engelbrecht, Alejandro F. Frangi:
  Quantitative Assessment of Estimation Approaches for Mining over Incomplete Data in Complex Biomedical Spaces: A Case Study on Cerebral Aneurysms. 63-71
  
• Carlos Carvalhal, Sérgio Deusdado, Leonel Deusdado:
  ASAP: An Automated System for Scientific Literature Search in PubMed Using Web Agents. 73-78
  
• Livia Campo, Vicente Vera, Alvaro Enrique Garcia, Juan Francisco de Paz, Juan M. Corchado:
  Case-Based Reasoning to Classify Endodontic Retreatments. 79-86
  
• R. Romero, Eva Lorenzo Iglesias, Lourdes Borrajo:
  A Comparative Analysis of Balancing Techniques and Attribute Reduction Algorithms. 87-94
  
• José Ignacio Requeno, Roberto Blanco, Gregorio de Miguel Casado, José Manuel Colom:
  Sliced Model Checking for Phylogenetic Analysis. 95-103
  
• Jorge Álvarez-Jarreta, Elvira Mayordomo, Eduardo Ruiz-Pesini:
  PHYSER: An Algorithm to Detect Sequencing Errors from Phylogenetic Information. 105-112
  
• Anália Lourenço, Andreia Ferreira, Maria Olívia Pereira, Nuno F. Azevedo:
  A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures. 113-120
  
• Juan Francisco de Paz, Carolina Zato, María Abáigar, Ana Rodríguez-Vicente, Rocío Benito, Jesús M. Hernández:
  Visual Analysis Tool in Comparative Genomics. 121-127
  
• Marco Alves, Joãd Alves, Rui Camacho, Pedro Soares, Luísa Pereira:
  From Networks to Trees. 129-136
  
• Antonio Martinez-Sanchez, Inmaculada García, José-Jesús Fernández:
  Procedure for Detection of Membranes in Three-Dimensional Subcellular Density Maps. 137-145
  
• Ángel Monteagudo, José Santos Reyes:
  A Cellular Automaton Model for Tumor Growth Simulation. 147-155
  
• Carlos A. Ruiz-Villa, Andrés P. Castaño, Andrés Castillo, Elvio Heidenreich:
  Ectopic Foci Study on the Crest Terminalis in 3D Computer Model of Human Atrial. 157-164
  
• Augusto Ramoa, Salomé Maia, Anália Lourenço:
  SAD_BaSe: A Blood Bank Data Analysis Software. 165-171
  
• Pedro Lopes, Rafael Mendonça, Hugo Rocha, Jorge Oliveira, Laura Vilarinho, Rosário Santos, José Luís Oliveira:
  A Rare Disease Patient Manager. 173-180
  
• Ana Margarida Sousa, Anália Lourenço, Maria Olívia Pereira:
  MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria. 181-188
  
• Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola:
  Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. 189-196
  
• Nuria Medina-Medina, A. Broka, S. Lacey, H. Lin, E. S. Klings, C. T. Baldwin, M. H. Steinberg, Paola Sebastiani:
  Comparing Bowtie and BWA to Align Short Reads from a RNA-Seq Experiment. 197-207
  
• Roberto González, Carolina Zato, Rocío Benito, María Hernández, Jesús M. Hernández, Juan Francisco de Paz:
  SAMasGC: Sequencing Analysis with a Multiagent System and Grid Computing. 209-216
  
• Diogo Pratas, Armando J. Pinho, Sara P. Garcia:
  Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. 217-224
  
• David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira:
  On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. 225-229
  
• José Ignacio Requeno, José Manuel Colom:
  Compact Representation of Biological Sequences Using Set Decision Diagrams. 231-239
  
• Sara Correia, Miguel Rocha:
  Computational Tools for Strain Optimization by Adding Reactions. 241-250
  
• Emanuel Gonçalves, Isabel Rocha, Miguel Rocha:
  Computational Tools for Strain Optimization by Tuning the Optimal Level of Gene Expression. 251-258
  
• Pedro T. Monteiro, Claudine Chaouiya:
  Efficient Verification for Logical Models of Regulatory Networks. 259-267
  
• Christoph Gernert, Evelin Berger, Frank Klawonn, Lothar Jänsch:
  Tackling Misleading Peptide Regulation Fold Changes in Quantitative Proteomics. 269-276
  
• Luis Fernando Castillo, Oscar Gómez-Ramírez, Narmer Galeano-Vanegas, Luis Bertel-Paternina, Gustavo A. Isaza, Álvaro Gaitán-Bustamante:
  Coffee Transcriptome Visualization Based on Functional Relationships among Gene Annotations. 277-283
  

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