PRIB 2009: Sheffield, UK

• Said Hassan Ahmed, Tor Flå:
  Evolutionary Parameters in Sequence Families. 1-12
  
• Doaa Altarawy, Mohamed A. Ismail, Sahar M. Ghanem:
  MProfiler: A Profile-Based Method for DNA Motif Discovery. 13-23
  
• Eser Aygün, B. John Oommen, Zehra Cataltepe:
  On Utilizing Optimal and Information Theoretic Syntactic Modeling for Peptide Classification. 24-35
  
• Jierong Cheng, Esther G. L. Koh, Sohail Ahmed, Jagath C. Rajapakse:
  Joint Tracking of Cell Morphology and Motion. 36-45
  
• Girija Chetty, Madhu Chetty:
  Multiclass Microarray Gene Expression Analysis Based on Mutual Dependency Models. 46-55
  
• Jisheng Dai, Chunqi Chang, Zhongfu Ye, Yeung Sam Hung:
  An Efficient Convex Nonnegative Network Component Analysis for Gene Regulatory Network Reconstruction. 56-66
  
• Rónán Daly, Kieron D. Edwards, John S. O'Neill, J. Stuart Aitken, Andrew J. Millar, Mark A. Girolami:
  Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana. 67-78
  
• Bassam Farran, Amirthalingam Ramanan, Mahesan Niranjan:
  Sequential Hierarchical Pattern Clustering. 79-88
  
• Paul S. Fisher, Howard Fisher, Jinsuk Baek, Cleopas O. Angaye:
  Syntactic Pattern Recognition Using Finite Inductive Strings. 89-101
  
• Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, Elena Marchiori:
  Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data. 102-112
  
• Marco Grzegorczyk, Dirk Husmeier:
  Avoiding Spurious Feedback Loops in the Reconstruction of Gene Regulatory Networks with Dynamic Bayesian Networks. 113-124
  
• Prasad Gunasekaran, Scott Grandison, Kevin Cowtan, Lora Mak, David M. Lawson, Richard J. Morris:
  Ligand Electron Density Shape Recognition Using 3D Zernike Descriptors. 125-136
  
• Keith Harris, Mark A. Girolami, Harald Mischak:
  Definition of Valid Proteomic Biomarkers: A Bayesian Solution. 137-149
  
• Keith Harris, Lisa McMillan, Mark A. Girolami:
  Inferring Meta-covariates in Classification. 150-161
  
• Tim Hohm, Eckart Zitzler:
  A Multiobjective Evolutionary Algorithm for Numerical Parameter Space Characterization of Reaction Diffusion Systems. 162-174
  
• Haiyun Lu, Hao Li, Shamima Banu Bte Sm Rashid, Wee Kheng Leow, Yih-Cherng Liou:
  Knowledge-Guided Docking of WW Domain Proteins and Flexible Ligands. 175-186
  
• Alexander V. Mantzaris, Dirk Husmeier:
  Distinguishing Regional from Within-Codon Rate Heterogeneity in DNA Sequence Alignments. 187-198
  
• Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz:
  A Hybrid Metaheuristic for Biclustering Based on Scatter Search and Genetic Algorithms. 199-210
  
• Minh Ngoc Nguyen, Jianmin Ma, Gary B. Fogel, Jagath C. Rajapakse:
  Di-codon Usage for Gene Classification. 211-221
  
• Grégory Nuel:
  Counting Patterns in Degenerated Sequences. 222-232
  
• Victor Olariu, Daniel Coca, Stephen A. Billings, Visakan Kadirkamanathan:
  Modelling Stem Cells Lineages with Markov Trees. 233-243
  
• Afolabi Olomola, Sumeet Dua:
  Bi-clustering of Gene Expression Data Using Conditional Entropy. 244-254
  
• Pierre Peterlongo, Jacques Nicolas, Dominique Lavenier, Raoul Vorc'h, Joël Querellou:
  c-GAMMA: Comparative Genome Analysis of Molecular Markers. 255-269
  
• Tamara Polajnar, Mark A. Girolami:
  Semi-supervised Prediction of Protein Interaction Sentences Exploiting Semantically Encoded Metrics. 270-281
  
• Tamara Polajnar, Simon Rogers, Mark A. Girolami:
  Classification of Protein Interaction Sentences via Gaussian Processes. 282-292
  
• Ramesh Ram, Madhu Chetty:
  MCMC Based Bayesian Inference for Modeling Gene Networks. 293-306
  
• Darío Rojas, Luis Rueda, Homero Urrutia, Alioune Ngom:
  Efficient Optimal Multi-level Thresholding for Biofilm Image Segmentation. 307-318
  
• Luis Rueda, Juan Carlos Rojas:
  A Pattern Classification Approach to DNA Microarray Image Segmentation. 319-330
  
• Amanda C. Schierz, Ross D. King:
  Drugs and Drug-Like Compounds: Discriminating Approved Pharmaceuticals from Screening-Library Compounds. 331-343
  
• Jian-Yu Shi, Yan-Ning Zhang:
  Fast SCOP Classification of Structural Class and Fold Using Secondary Structure Mining in Distance Matrix. 344-353
  
• Kazuhito Shida:
  Short Segment Frequency Equalization: A Simple and Effective Alternative Treatment of Background Models in Motif Discovery. 354-364
  
• Laleh Soltan Ghoraie, Robin Gras, Lili Wang, Alioune Ngom:
  Bayesian Optimization Algorithm for the Non-unique Oligonucleotide Probe Selection Problem. 365-376
  
• Numanul Subhani, Alioune Ngom, Luis Rueda, Conrad J. Burden:
  Microarray Time-Series Data Clustering via Multiple Alignment of Gene Expression Profiles. 377-390
  
• Ian Walsh, Alessandro Vullo, Gianluca Pollastri:
  Recursive Neural Networks for Undirected Graphs for Learning Molecular Endpoints. 391-403
  
• Shereena M. Arif, Jérôme Hert, John D. Holliday, Nurul Malim, Peter Willett:
  Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of Occurrence. 404-414
  
• Benjamin Wright, John Fenner, Richard Gillott, Paul Spencer, Patricia V. Lawford, Karna Dev Bardhan:
  Patterns, Movement and Clinical Diagnosis of Abdominal Adhesions. 415-426
  
• Yiming Ying, Colin Campbell, Theodoros Damoulas, Mark A. Girolami:
  Class Prediction from Disparate Biological Data Sources Using an Iterative Multi-Kernel Algorithm. 427-438
  
• Salih Tuna, Mahesan Niranjan:
  Cross-Platform Analysis with Binarized Gene Expression Data. 439-449