12. PVM/MPI 2005: Sorrento, Italy

Invited Talks

• Al Geist:
  New Directions in PVM/Harness Research. 1-3
  
• William D. Gropp:
  Towards a Productive MPI Environment. 4
  
• Ewing L. Lusk:
  Components of Systems Software for Parallel Systems. 5
  
• Vaidy S. Sunderam:
  Virtualization in Parallel Distributed Computing. 6
  

Tutorials

• Graham E. Fagg, George Bosilca:
  Advanced Message Passing and Threading Issues. 7
  
• William D. Gropp, Ewing L. Lusk:
  Using MPI-2: A Problem-Based Approach. 8
  

Algorithms

• Thomas Serafini, Luca Zanni, Gaetano Zanghirati:
  Some Improvements to a Parallel Decomposition Technique for Training Support Vector Machines. 9-17
  
• Agnieszka Debudaj-Grabysz, Rolf Rabenseifner:
  Nesting OpenMP in MPI to Implement a Hybrid Communication Method of Parallel Simulated Annealing on a Cluster of SMP Nodes. 18-27
  
• Dora Souliou, Aris Pagourtzis, Nikolaos Drosinos:
  Computing Frequent Itemsets in Parallel Using Partial Support Trees. 28-37
  
• Emilio Mancini, Sonya Marcarelli, Pierluigi Ritrovato, Igor Vasil'ev, Umberto Villano:
  A Grid-Aware Branch, Cut and Price Implementation. 38-47
  
• Jesper Larsson Träff, Andreas Ripke:
  An Optimal Broadcast Algorithm Adapted to SMP Clusters. 48-56
  
• George Almási, Gábor Dózsa, C. Christopher Erway, Burkhard D. Steinmacher-Burow:
  Efficient Implementation of Allreduce on BlueGene/L Collective Network. 57-66
  
• Graham E. Fagg, Thara Angskun, George Bosilca, Jelena Pjesivac-Grbovic, Jack Dongarra:
  Scalable Fault Tolerant MPI: Extending the Recovery Algorithm. 67-75
  
• Julien Langou, George Bosilca, Graham E. Fagg, Jack Dongarra:
  Hash Functions for Datatype Signatures in MPI. 76-83
  

Extensions and Improvements

• Robert Latham, Robert B. Ross, Rajeev Thakur, Brian R. Toonen:
  Implementing MPI-IO Shared File Pointers Without File System Support. 84-93
  
• Franco Frattolillo, Salvatore D'Onofrio:
  An Efficient Parallel File System for Cluster Grids. 94-101
  
• Wei-keng Liao, Kenin Coloma, Alok N. Choudhary, Lee Ward:
  Cooperative Write-Behind Data Buffering for MPI I/O. 102-109
  
• Hipolito Vasquez Lucas, Thomas Ludwig:
  Hint Controlled Distribution with Parallel File Systems. 110-118
  
• Rajeev Thakur, Robert B. Ross, Robert Latham:
  Implementing Byte-Range Locks Using MPI One-Sided Communication. 119-128
  
• Jesper Larsson Träff:
  An Improved Algorithm for (Non-commutative) Reduce-Scatter with an Application. 129-137
  
• Christopher Falzone, Anthony Chan, Ewing L. Lusk, William Gropp:
  Collective Error Detection for MPI Collective Operations. 138-147
  
• Antonio J. Dorta, José M. Badía, Enrique S. Quintana-Ortí, Francisco de Sande:
  Implementing OpenMP for Clusters on Top of MPI. 148-155
  
• Darius Buntinas, William Gropp:
  Designing a Common Communication Subsystem. 156-166
  
• Michal Kouril, Jerome L. Paul:
  Dynamic Interoperable Message Passing. 167-174
  
• Brian Barrett, Jeffrey M. Squyres, Andrew Lumsdaine, Richard L. Graham, George Bosilca:
  Analysis of the Component Architecture Overhead in Open MPI. 175-182
  
• Craig Edward Rasmussen, Jeffrey M. Squyres:
  A Case for New MPI Fortran Bindings. 183-190
  
• Wei Huang, Gopalakrishnan Santhanaraman, Hyun-Wook Jin, Dhabaleswar K. Panda:
  Design Alternatives and Performance Trade-Offs for Implementing MPI-2 over InfiniBand. 191-199
  
• Lei Chai, Ranjit Noronha, Prachi Gupta, G. Brown, Dhabaleswar K. Panda:
  Designing a Portable MPI-2 over Modern Interconnects Using uDAPL Interface. 200-208
  
• Davide Falessi, Guido Pennella, Giovanni Cantone:
  Experiences, Strategies and Challenges in Adapting PVM to VxWorks™ Hard Real-Time Operating System, for Safety-Critical Software. 209-216
  
• Markus Bornemann, Rob van Nieuwpoort, Thilo Kielmann:
  MPJ/Ibis: A Flexible and Efficient Message Passing Platform for Java. 217-224
  

Cluster and Grid

• Ralph H. Castain, Timothy S. Woodall, David J. Daniel, Jeffrey M. Squyres, Brian Barrett, Graham E. Fagg:
  The Open Run-Time Environment (OpenRTE): A Transparent Multi-cluster Environment for High-Performance Computing. 225-232
  
• Rafael Martínez-Torres:
  PVM-3.4.4 + IPv6: Full Grid Connectivity. 233-240
  
• Mario Petrone, Roberto Zarrelli:
  Utilizing PVM in a Multidomain Clusters Environment. 241-249
  
• Paul L. Springer:
  Enhancements to PVM's BEOLIN Architecture. 250-257
  
• André Luckow, Bettina Schnor:
  Migol: A Fault-Tolerant Service Framework for MPI Applications in the Grid. 258-267
  
• David Dewolfs, Dawid Kurzyniec, Vaidy S. Sunderam, Jan Broeckhove, Tom Dhaene, Graham E. Fagg:
  Applicability of Generic Naming Services and Fault-Tolerant Metacomputing with FT-MPI. 268-275
  
• Stéphane Genaud, Choopan Rattanapoka:
  A Peer-to-Peer Framework for Robust Execution of Message Passing Parallel Programs on Grids. 276-284
  
• Francesco Gregoretti, Giuliano Laccetti, Almerico Murli, Gennaro Oliva, U. Scafuri:
  MGF: A Grid-Enabled MPI Library with a Delegation Mechanism to Improve Collective Operations. 285-292
  

Tools and Environments

• Josep Jorba, Tomàs Margalef, Emilio Luque:
  Automatic Performance Analysis of Message Passing Applications Using the KappaPI 2 Tool. 293-300
  
• Werner Augustin, Marc-Oliver Straub, Thomas Worsch:
  Benchmarking One-Sided Communication with SKaMPI 5. 301-308
  
• Shirley Moore, Felix Wolf, Jack Dongarra, Sameer Shende, Allen D. Malony, Bernd Mohr:
  A Scalable Approach to MPI Application Performance Analysis. 309-316
  
• Roland Wismüller, Marian Bubak, Wlodzimierz Funika:
  High-Level Application Specific Performance Analysis Using the G-PM Tool. 317-324
  
• Brett Carson, Ian A. Mason:
  ClusterGrind: Valgrinding LAM/MPI Applications. 325-332
  
• Narayan Desai, Ewing L. Lusk, Rick Bradshaw:
  MPISH2: Unix Integration for MPI Programs. 333-342
  
• Yiannis Cotronis, Paul Polydoras:
  Ensemble-2: Dynamic Composition of MPMD Programs. 343-350
  
• Pawel Czarnul, Marcin Fraczak:
  New User-Guided and ckpt-Based Checkpointing Libraries for Parallel MPI Applications. 351-358
  

Performance

• Sameer Shende, Allen D. Malony, Alan Morris, Felix Wolf:
  Performance Profiling Overhead Compensation for MPI Programs. 359-367
  
• Rolf Rabenseifner, Sunil R. Tiyyagura, Matthias Müller:
  Network Bandwidth Measurements and Ratio Analysis with the HPC Challenge Benchmark Suite (HPCC). 368-378
  
• Mauricio Hanzich, Francesc Giné, Porfidio Hernández, Francesc Solsona, Emilio Luque:
  A Space and Time Sharing Scheduling Approach for PVM Non-dedicated Clusters. 379-387
  
• Amith R. Mamidala, Hyun-Wook Jin, Dhabaleswar K. Panda:
  Efficient Hardware Multicast Group Management for Multiple MPI Communicators over InfiniBand. 388-398
  
• Pablo E. García, Juan Fernández, Fabrizio Petrini, José M. García:
  Assessing MPI Performance on QsNet^II. 399-406
  
• Duncan Roweth, David Addison:
  Optimised Gather Collectives on QsNet ^II. 407-414
  
• William D. Gropp, Rajeev Thakur:
  An Evaluation of Implementation Options for MPI One-Sided Communication. 415-424
  
• Ron Brightwell:
  A Comparison of Three MPI Implementations for Red Storm. 425-432
  

Applications

• Benjamin Almeida, Reema Mahajan, Dieter Kranzlmüller, Jens Volkert, Siegfried Höfinger:
  Probing the Applicability of Polarizable Force-Field Molecular Dynamics for Parallel Architectures: A Comparison of Digital MPI with LAM-MPI and MPICH2. 433-440
  
• María Blanca Ibáñez, Félix García, Jesús Carretero:
  Symmetrical Data Sieving for Noncontiguous I/O Accesses in Molecular Dynamics Simulations. 441-448
  
• Diego Mostaccio, Remo Suppi, Emilio Luque:
  Simulation of Ecologic Systems Using MPI. 449-456
  
• Andrea Clematis, Daniele D'Agostino, Vittoria Gianuzzi:
  Load Balancing and Computing Strategies in Pipeline Optimization for Parallel Visualization of 3D Irregular Meshes. 457-466
  
• David Sánchez, Elsa M. Macías, Álvaro Suárez:
  An Improved Mechanism for Controlling Portable Computers in Limited Coverage Areas. 467-474
  
• Juan A. Rico-Gallego, Juan Carlos Díaz Martín, Jesús M. Álvarez Llorente:
  An MPI Implementation for Distributed Signal Processing. 475-482
  
• Luca Bergamaschi, Marco Caliari, Angeles Martinez, Marco Vianello:
  A Parallel Exponential Integrator for Large-Scale Discretizations of Advection-Diffusion Models. 483-492
  
• Christoph Troyer, Daniele Baraldi, Dieter Kranzlmüller, Heinz Wilkening, Jens Volkert:
  Parallel Grid Adaptation and Dynamic Load Balancing for a CFD Solver. 493-501
  

Special Session: ParSim 2005

• Martin Schulz, Carsten Trinitis:
  4^th International Special Session on: Current Trends in Numerical Simulation for Parallel Engineering Environments ParSim 2005. 502-503
  
• Ralf-Peter Mundani, Ioan Lucian Muntean, Hans-Joachim Bungartz, Andreas Niggl, Ernst Rank:
  Applying Grid Techniques to an Octree-Based CSCW Framework. 504-511
  
• Jaroslaw Forenc, Andrzej Jordan, Marek Tudruj:
  Parallel Modeling of Transient States Analysis in Electrical Circuits. 512-519
  
• Dries Kimpe, Andrea Lani, Tiago Quintino, Stefaan Poedts, Stefan Vandewalle:
  The COOLFluiD Parallel Architecture. 520-527
  
• Marcus Komann, Christian Kauhaus, Dietmar Fey:
  Calculation of Single-File Diffusion Using Grid-Enabled Parallel Generic Cellular Automata Simulation. 528-535
  
• Petra Wenisch, Oliver Wenisch, Ernst Rank:
  Harnessing High-Performance Computers for Computational Steering. 536-543