Proceedings of the Sventh Annual International Conference on Computational Biology, April 10-13, 2003, Berlin, Germany. ACM, 2003

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  Tatsuya Akutsu: Efficient extraction of mapping rules of atoms from enzymatic reaction data. 1-8
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  Vineet Bafna, Nathan Edwards: On de novo interpretation of tandem mass spectra for peptide identification. 9-18
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  Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail: Haplotypes and informative SNP selection algorithms: don't block out information. 19-27
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  Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kaplan: Modeling dependencies in protein-DNA binding sites. 28-37
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  Gill Bejerano: Efficient exact value computation and applications to biosequence analysis. 38-47
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  Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini: Towards optimally multiplexed applications of universal DNA tag systems. 48-56
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  Mathieu Blanchette: A comparative analysis method for detecting binding sites in coding regions. 57-66
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  Jeremy Buhler, Uri Keich, Yanni Sun: Designing seeds for similarity search in genomic DNA. 67-75
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  Benny Chor, Amit Khetan, Sagi Snir: Maximum likelihood on four taxa phylogenetic trees: analytic solutions. 76-83
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  Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen: Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts. 84-93
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  Andrew G. Clark: Haplotype phase inference. 94-94
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  Minghua Deng, Ting Chen, Fengzhu Sun: An integrated probabilistic model for functional prediction of proteins. 95-103
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  Eleazar Eskin, Eran Halperin, Richard M. Karp: Large scale reconstruction of haplotypes from genotype data. 104-113
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  Maáyan Fishelson, Dan Geiger: Optimizing exact genetic linkage computations. 114-121
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  Áprád Furka: Combinatorial synthesis on macroscopic solid support units. 122-122
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  Aristides Gionis, Heikki Mannila: Finding recurrent sources in sequences. 123-130
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  Gideon Greenspan, Dan Geiger: Model-based inference of haplotype block variation. 131-137
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  David Haussler: Computational analysis of the human and other mammalian genomes. 138-138
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  Andreas Heger, Michael Lappe, Liisa Holm: Accurate detection of very sparse sequence motifs. 139-147
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  Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky: Engineering a scalable placement heuristic for DNA probe arrays. 148-156
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  Manolis Kamvysselis, Nick Patterson, Bruce Birren, Bonnie Berger, Eric S. Lander: Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species. 157-16
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  Balaji Krishnapuram, Lawrence Carin, Alexander J. Hartemink: Joint classifier and feature optimization for cancer diagnosis using gene expression data. 167-175
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  Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald: Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. 176-187
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  Neal Lesh, Michael Mitzenmacher, Sue Whitesides: A complete and effective move set for simplified protein folding. 188-195
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  Arthur M. Lesk: Invited: Prediction of protein function. 196-196
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  Jing Li, Tao Jiang: Efficient rule-based haplotyping algorithms for pedigree data. 197-206
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  Lei M. Li, Jong Hyun Kim, Michael S. Waterman: Haplotype reconstruction from SNP alignment. 207-216
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  Wentian Li, Ivo Grosse: Gene selection criterion for discriminant microarray data analysis based on extreme value distributions. 217-223
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  Niranjan Nagarajan, Golan Yona: A multi-expert system for the automatic detection of protein domains from sequence information. 224-234
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  Christiane Nüsslein-Volhard: Invited. 235-235
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  Dieter Oesterhelt: Biology and bioinformatics of halophilism. 236-236
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  Itsik Pe'er, Jacques S. Beckmann: Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples. 237-246
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  Pavel A. Pevzner, Glenn Tesler: Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. 247-256
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  Krishna M. Roskin, Mark Diekhans, David Haussler: Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. 257-266
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  Fabian Schwarzer, Itay Lotan: Approximation of protein structure for fast similarity measures. 267-276
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  Adam C. Siepel, David Haussler: Combining phylogenetic and hidden Markov models in biosequence analysis. 277-286
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  Terence P. Speed: Low-level analyses of microarray data. 287-287
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  Kari Stefansson: Invited. 288-288
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  Umar Syed, Golan Yona: Using a mixture of probabilistic decision trees for direct prediction of protein function. 289-300
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  Amos Tanay, Ron Shamir: Modeling transcription programs: inferring binding site activity and dose-response model optimization. 301-310
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  Edward N. Trifonov: Poetry and prose of the sequences. 311-311
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  Chen-Hsiang Yeang, Tommi Jaakkola: Physical network models and multi-source data integration. 312-321
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  Gene W. Yeo, Christopher B. Burge: Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. 322-331
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  Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen: Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. 332-340