11. RECOMB 2007: Oakland, CA, USA

• Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan:
  QNet: A Tool for Querying Protein Interaction Networks. 1-15
  
• Rohit Singh, Jinbo Xu, Bonnie Berger:
  Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology. 16-31
  
• Allister Bernard, David S. Vaughn, Alexander J. Hartemink:
  Reconstructing the Topology of Protein Complexes. 32-46
  
• T. M. Murali, Corban G. Rivera:
  Network Legos: Building Blocks of Cellular Wiring Diagrams. 47-61
  
• Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli:
  An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments. 62-76
  
• Eilon Sharon, Eran Segal:
  A Feature-Based Approach to Modeling Protein-DNA Interactions. 77-91
  
• Joshua A. Grochow, Manolis Kellis:
  Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking. 92-106
  
• Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink:
  Nucleosome Occupancy Information Improves de novo Motif Discovery. 107-121
  
• Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein, Anne-Lise Børresen-Dale, Zohar Yakhini:
  Framework for Identifying Common Aberrations in DNA Copy Number Data. 122-136
  
• Wenyi Wang, Benilton Carvalho, Nate Miller, Jonathan Pevsner, Aravinda Chakravarti, Rafael A. Irizarry:
  Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models. 137-150
  
• Yanxin Shi, Fan Guo, Wei Wu, Eric P. Xing:
  GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data. 151-165
  
• Hiroyuki Kuwahara, Chris J. Myers:
  Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions. 166-180
  
• Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic:
  Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding. 181-195
  
• Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin:
  Reconstructing the Phylogeny of Mobile Elements. 196-210
  
• Daniel H. Huson, Tobias H. Klöpper:
  Beyond Galled Trees - Decomposition and Computation of Galled Networks. 211-225
  
• Ydo Wexler, Dan Geiger:
  Variational Upper Bounds for Probabilistic Phylogenetic Models. 226-237
  
• Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe:
  Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search. 238-252
  
• Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Jaroslaw Pillardy:
  Support Vector Training of Protein Alignment Models. 253-267
  
• Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato:
  Tools for Simulating and Analyzing RNA Folding Kinetics. 268-282
  
• Yue Lu, Sing-Hoi Sze:
  Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. 283-295
  
• Joël R. Pradines, Vlado Dancík, Alan Ruttenberg, Victor Farutin:
  Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data. 296-310
  
• Antonio Piccolboni:
  Multivariate Segmentation in the Analysis of Transcription Tiling Array Data. 311-324
  
• Anitha Kannan, Andrew Emili, Brendan J. Frey:
  A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements. 325-338
  
• Michal Ozery-Flato, Ron Shamir:
  Rearrangements in Genomes with Centromeres Part I: Translocations. 339-353
  
• Erik Corona, Benjamin J. Raphael, Eleazar Eskin:
  Identification of Deletion Polymorphisms from Haplotypes. 354-365
  
• Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead:
  Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. 366-380
  
• Chen Yanover, Ora Schueler-Furman, Yair Weiss:
  Minimizing and Learning Energy Functions for Side-Chain Prediction. 381-395
  
• Anshul Nigham, David Hsu:
  Protein Conformational Flexibility Analysis with Noisy Data. 396-411
  
• Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
  Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. 412-429
  
• Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk:
  Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. 430-443
  
• Marshall W. Bern, David Goldberg:
  Improved Ranking Functions for Protein and Modification-Site Identifications. 444-458
  
• Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble:
  Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. 459-472
  
• Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert:
  A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. 473-487
  
• Yufeng Wu:
  Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms. 488-502
  
• Srinath Sridhar, Satish Rao, Eran Halperin:
  An Efficient and Accurate Graph-Based Approach to Detect Population Substructure. 503-517
  
• Wah-Heng Lee, Wing-Kin Sung:
  RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. 518-532
  
• Cyrus L. Harmon, Parvez Ahammad, Ann Hammonds, Richard Weiszmann, Susan E. Celniker, Shankar Sastry, Gerald M. Rubin:
  Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs. 533-547
  

Last update Sun May 19 23:29:44 2013 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page