Regulatory Genomics / RECOMB 2004: San Diego, CA, USA

• Manuel Middendorf, Anshul Kundaje, Chris Wiggins, Yoav Freund, Christina S. Leslie:
  Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response. 1-13
  
• Thomas Manke, Christoph Dieterich, Martin Vingron:
  Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. 14-21
  
• William Krivan:
  Fishing for Proteins in the Pacific Northwest. 22-29
  
• Rahul Siddharthan, Erik van Nimwegen, Eric D. Siggia:
  PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information. 30-41
  
• Alexander E. Kel, Yuri Tikunov, Nico Voss, Jürgen Borlak, Edgar Wingender:
  Application of Kernel Method to Reveal Subtypes of TF Binding Motifs. 42-51
  
• Keith Noto, Mark Craven:
  Learning Regulatory Network Models that Represent Regulator States and Roles. 52-64
  
• Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini:
  Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs. 65-78
  
• Natalia Polouliakh, Michiko Konno, Paul Horton, Kenta Nakai:
  Parameter Landscape Analysis for Common Motif Discovery Programs. 79-87
  
• Vladimir Filkov, Nameeta Shah:
  Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data. 88-97
  
• Irit Gat-Viks, Amos Tanay, Ron Shamir:
  Modeling and Analysis of Heterogeneous Regulation in Biological Networks. 98-113