Systems Biology and Regulatory Genomics 2005: San Diego, CA, USA

• Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen:
  An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome. 1-10
  
• David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln:
  The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways. 11-22
  
• Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka:
  Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations. 23-38
  
• Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker:
  Comparison of Protein-Protein Interaction Confidence Assignment Schemes. 39-50
  
• Michal Lapidot, Yitzhak Pilpel:
  Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs. 51-61
  
• Michiel J. L. de Hoon, Dennis Vitkup:
  Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes. 62-69
  
• Haseong Kim, Jae K. Lee, Taesung Park:
  Improvement of Computing Times in Boolean Networks Using Chi-square Tests. 70-79
  
• Guandong Wang, Weixiong Zhang:
  Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements. 80-94
  
• David Kulp, Manjunatha Jagalur:
  Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes. 95-106
  
• Orna Man, Joel L. Sussman, Yitzhak Pilpel:
  Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels. 107-118
  
• Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp:
  Improved Duplication Models for Proteome Network Evolution. 119-137
  
• Chih-Yu Chen, Von-Wun Soo, Chi-Li Kuo:
  Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis. 138-149
  
• Elissa J. Chesler, Michael A. Langston:
  Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data. 150-165
  
• Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng:
  Topological Robustness of the Protein-Protein Interaction Networks. 166-177
  
• Sudhakar Jonnalagadda, Rajagopalan Srinivasan:
  A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data. 178-187
  
• Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams:
  Probabilistic in Silico Prediction of Protein-Peptide Interactions. 188-197
  
• Sing-Hoi Sze, Xiaoyan Zhao:
  Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences. 198-211
  
• Huiquan Wang, Craig J. Benham:
  Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties. 212-224
  
• Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli:
  An Interaction-Dependent Model for Transcription Factor Binding. 225-234
  
• Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang:
  Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana. 235-248
  
• Aviv Mezer, Eran Bosis, Uri Ashery, Esther Nachliel, Menachem Gutman:
  A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism. 249-257