SC 2000: Dallas, Texas, USA

MPI

• Jesper Larsson Träff, Hubert Ritzdorf, Rolf Hempel:
  The Implementation of MPI-2 One-Sided Communication for the NEC SX-5.
  
• Stephen Booth, Fernando Elson Mourão:
  Single sided MPI implementations for SUN MPI.
  
• Sathish S. Vadhiyar, Graham E. Fagg, Jack Dongarra:
  Automatically Tuned Collective Communications.
  

Numerical Algorithms

• Kevin B. Theobald, Gagan Agrawal, Rishi Kumar, Gerd Heber, Guang R. Gao, Paul Stodghill, Keshav Pingali:
  Landing CG on EARTH: A Case Study of Fine-Grained Multithreading on an Evolutionary Path.
  
• Ray S. Tuminaro, Charles Tong:
  Parallel Smoothed Aggregation Multigrid: Aggregation Strategies on Massively Parallel Machines.
  
• Robert H. Oehmke, Janis Hardwick, Quentin F. Stout:
  Scalable Algorithms for Adaptive Statistical Designs.
  

Scheduling

• Dejan Perkovic, Peter J. Keleher:
  Randomization, Speculation, and Adaptation in Batch Schedulers.
  
• Lance Smith, Rod Fatoohi:
  An Object-Oriented Job Execution Environment.
  
• Insung Park, Nirav H. Kapadia, Renato J. O. Figueiredo, Rudolf Eigenmann, José A. B. Fortes:
  Towards an Integrated, Web-executable Parallel Programming Tool Environment.
  

MPI/OpenMP

• D. S. Henty:
  Performance of Hybrid Message-Passing and Shared-Memory Parallelism for Discrete Element Modeling.
  
• Hongzhang Shan, Jaswinder Pal Singh, Leonid Oliker, Rupak Biswas:
  A Comparison of Three Programming Models for Adaptive Applications on the Origin2000.
  
• Franck Cappello, Daniel Etiemble:
  MPI versus MPI+OpenMP on IBM SP for the NAS Benchmarks.
  

Potpouri

• Maozhen Li, Omer F. Rana, Matthew S. Shields, David W. Walker:
  A Wrapper Generator for Wrapping High Performance Legacy Codes as Java/CORBA Components.
  
• Rajesh Subramanyan, José Miguel-Alonso, José A. B. Fortes:
  A Scalable SNMP-Based Distributed Monitoring System For Heterogeneous Network Computing.
  
• Adrian T. Wong, Leonid Oliker, William T. C. Kramer, Teresa L. Kaltz, David H. Bailey:
  ESP: A System Utilization Benchmark.
  

Cluster Infrastructure

• Toshiyuki Takahashi, Shinji Sumimoto, Atsushi Hori, Hiroshi Harada, Yutaka Ishikawa:
  PM2: A High Performance Communication Middleware for Heterogeneous Network Environments.
  
• Sumalatha Adabala, Nirav H. Kapadia, José A. B. Fortes:
  Performance and Interoperability Issues in Incorporating Cluster Management Systems Within a Wide-Area Network-Computing Environment.
  
• Jenwei Hsieh, Tau Leng, Victor Mashayekhi, Reza Rooholamini:
  Architectural and Performance Evaluation of GigaNet and Myrinet Interconnects on Clusters of Small-Scale SMP Servers.
  

QoS/Fault Tolerance

• Alain J. Roy, Ian T. Foster, William Gropp, Nicholas T. Karonis, Volker Sander, Brian R. Toonen:
  MPICH-GQ: Quality-of-Service for Message Passing Programs.
  
• Florin Sultan, Thu D. Nguyen, Liviu Iftode:
  Scalable Fault-Tolerant Distributed Shared Memory.
  
• Chu-Sing Yang, Mon-Yen Luo:
  Realizing Fault Resilience in Web-Server Cluster.
  

Biomedical Applications

• Zina Ben-Miled, Yang Liu, David Powers, Omran A. Bukhres, Michael Bem, Robert Jones, Robert J. Oppelt, Samuel Milosevich:
  Data Access Performance in a Large and Dynamic Pharmaceutical Drug Candidate Database.
  
• Simon K. Warfield, Matthieu Ferrant, Xavier Gallez, Arya Nabavi, Ferenc A. Jolesz, Ron Kikinis:
  Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery.
  
• John B. Pormann, Craig S. Henriquez, John A. Board Jr., Donald J. Rose, David M. Harrild, Alexandra P. Henriquez:
  Computer Simulations of Cardiac Electrophysiology.
  

Applications I

• Steve Plimpton, Bruce Hendrickson, Shawn Burns, Will McLendon III:
  Parallel Algorithms for Radiation Transport on Unstructured Grids.
  
• James F. Antaki, Guy E. Blelloch, Omar Ghattas, Ivan Malcevic, Gary L. Miller, Noel Walkington:
  A Parallel Dynamic-Mesh Lagrangian Method for Simulation of Flows with Dynamic Interfaces.
  
• Ji Qiang, Robert D. Ryne, Salman Habib:
  Self-Consistent Langevin Simulation of Coulomb Collisions in Charged-Particle Beams.
  

Visualization

• E. Wes Bethel, Brian Tierney, Jason Lee, Dan Gunter, Stephen Lau:
  Using High-Speed WANs and Network Data Caches to Enable Remote and Distributed Visualization.
  
• Kwan-Liu Ma, David M. Camp:
  High Performance Visualization of Time-Varying Volume Data over a Wide-Area Network Status.
  
• Greg Humphreys, Ian Buck, Matthew Eldridge, Pat Hanrahan:
  Distributed Rendering for Scalable Displays.
  

Compiler Optimization

• Nawaaz Ahmed, Nikolay Mateev, Keshav Pingali:
  Tiling Imperfectly-Nested Loop Nests.
  
• Gabriel Rivera, Chau-Wen Tseng:
  Tiling Optimizations for 3D Scientific Computations.
  
• Y. Charlie Hu, Alan L. Cox, Willy Zwaenepoel:
  Improving Fine-Grained Irregular Shared-Memory Benchmarks by Data Reordering.
  

Applications II

• William Gropp, Dinesh K. Kaushik, David E. Keyes, Barry F. Smith:
  Performance Modeling and Tuning of an Unstructured Mesh CFD Application.
  
• Quinn Snell, Michael Whiting, Mark J. Clement, David McLaughlin:
  Parallel Phylogenetic Inference.
  
• Cetin C. Kiris, Dochan Kwak, William Chan:
  Parallel Unsteady Turbo-Pump Simulations For Liquid Rocket Engines.
  

Networking

• Wu-chun Feng, Peerapol Tinnakornsrisuphap:
  The Failure of TCP in High-Performance Computational Grids.
  
• Harimath Sivakumar, Stuart Bailey, Robert L. Grossman:
  PSockets: The Case for Application-level Network Striping for Data Intensive Applications using High Speed Wide Area Networks.
  
• Fabián E. Bustamante, Greg Eisenhauer, Karsten Schwan, Patrick Widener:
  Efficient Wire Formats for High Performance Computing.
  

Hardware Based Tools

• Bryan R. Buck, Jeffrey K. Hollingsworth:
  Using Hardware Performance Monitors to Isolate Memory Bottlenecks.
  
• Jean-Thomas Acquaviva, William Jalby:
  Hardware Prediction for Data Coherency of Scientific Codes on DSM.
  
• Shirley Browne, Jack Dongarra, N. Garner, Kevin S. London, Philip Mucci:
  A Scalable Cross-Platform Infrastructure for Application Performance Tuning Using Hardware Counters.
  

Gordon Bell I

• Junichiro Makino, Toshiyuki Fukushige, Masaki Koga:
  A 1.349 Tflops Simulation of Black Holes in a Galactic Center on GRAPE-6.
  
• Douglas Aberdeen, Jonathan Baxter, Robert Edwards:
  98¢/Mflops/s, Ultra-Large-Scale Neural-Network Training on a PIII Cluster.
  
• Robert Brunner, James C. Phillips, Laxmikant V. Kalé:
  Scalable Molecular Dynamics for Large Biomolecular Systems.
  

Parallel Programming

• Bradford L. Chamberlain, Steven J. Deitz, Lawrence Snyder:
  A Comparative Study of the NAS MG Benchmark across Parallel Languages and Architectures.
  
• Dimitrios S. Nikolopoulos, Theodore S. Papatheodorou, Constantine D. Polychronopoulos, Jesús Labarta, Eduard Ayguadé:
  Is Data Distribution Necessary in OpenMP?
  
• John Bircsak, Peter Craig, RaeLyn Crowell, Zarka Cvetanovic, Jonathan Harris, C. Alexander Nelson, Carl D. Offner:
  Extending OpenMP for NUMA Machines.
  

Software Tools

• Kathleen A. Lindlan, Janice E. Cuny, Allen D. Malony, Sameer Shende, Bernd Mohr, Reid Rivenburgh, Craig Edward Rasmussen:
  A Tool Framework for Static and Dynamic Analysis of Object-Oriented Software with Templates.
  
• Ching-Farn Eric Wu, Anthony Bolmarcich, Marc Snir, David Wootton, Farid Parpia, Anthony Chan, Ewing L. Lusk, William Gropp:
  From Trace Generation to Visualization: A Performance Framework for Distributed Parallel Systems.
  
• Jeffrey S. Vetter, Bronis R. de Supinski:
  Dynamic Software Testing of MPI Applications with Umpire.
  

Data Grid

• William E. Johnston, Dennis Gannon, Bill Nitzberg, Leigh Ann Tanner, Bill Thigpen, Alex Woo:
  Computing and Data Grids for Science and Engineering.
  
• Hyo Jung Song, Xianan Liu, Dennis Jakobsen, Ranjita Bhagwan, Xingbin Zhang, Kenjiro Taura, Andrew A. Chien:
  The MicroGrid: a Scientific Tool for Modeling Computational Grids.
  

Gordon Bell II

• Tetsu Narumi, Ryutaro Susukita, Takahiro Koishi, Kenji Yasuoka, Hideaki Furusawa, Atsushi Kawai, Toshikazu Ebisuzaki:
  1.34 Tflops Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM.
  
• Thomas Hauser, Timothy Mattox, Raymond P. LeBeau, Henry G. Dietz, P. George Huang:
  High-Cost CFD on a Low-Cost Cluster.
  
• A. C. Calder, Bruce C. Curtis, L. J. Dursi, Bruce Fryxell, Greg Henry, Peter MacNeice, Kevin Olson, P. Ricker, R. Rosner, F. X. Timmes, Henry M. Tufo, J. W. Turan, Michael Zingale:
  High Performance Reactive Fluid Flow Simulations Using Adaptive Mesh Refinement on Thousands of Processors.
  

Awards Session

Science Applications Support

• Jaechun No, Rajeev Thakur, Alok N. Choudhary:
  Integrating Parallel File I/O and Database Support for High-Performance Scientific Data Management.
  
• Nawaaz Ahmed, Nikolay Mateev, Keshav Pingali, Paul Stodghill:
  A Framework for Sparse Matrix Code Synthesis from High-level Specifications.
  
• Kirk Schloegel, George Karypis, Vipin Kumar:
  A Unified Algorithm for Load-balancing Adaptive Scientific Simulations.
  

Grid Middleware

• Henri Casanova, Graziano Obertelli, Francine Berman, Richard Wolski:
  The AppLeS Parameter Sweep Template: User-Level Middleware for the Grid.
  
• Madhusudhan Govindaraju, Aleksander Slominski, Venkatesh Choppella, Randall Bramley, Dennis Gannon:
  Requirements for and Evaluation of RMI Protocols for Scientific Computing.
  
• Tao Zhao, Vijay Karamcheti:
  Expressing and Enforcing Distributed Resource Sharing Agreements.
  

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