2. WOB 2003: Macaé, RJ, Brazil

Sérgio Lifschitz, Nalvo F. Almeida Jr., Georgios Joannis Pappas Jr., Ricardo Linden (Eds.): II Brazilian Workshop on Bioinformatics, December 3-5, 2003, Macaé, RJ, Brazil. 2003

Genomics data mining

João Piazza, João C. Setubal: New ways for automatic detection of contaminats in EST projects. 1-9
Gustavo E. A. P. A. Batista, Ana L. C. Bazzan, Maria Carolina Monard: Balancing Training Data for Automated Annotation of Keywords: a Case Study. 10-18
Rodrigo Bianchi, Claudia Regina Milaré, André Carlos Ponce Leon Ferreira de Carvalho: E. Coli Promoter Gene Sequence and Human Splice Site Identification with Explanation by Extracting Rules from Trained Artificial Neural Networks. 19-27
Lalinka de C. T. Gomes, Janaína S. de Sousa, George Barreto Bezerra, Leandro Nunes de Castro, Fernando J. Von Zuben: Copt-aiNet and the Gene Ordering Problem. 28-37

Biological data models and Functional analysis

Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal: A data model for comparative genomics. 38-46
Luiz Fernando Bessa Seibel, José Antônio Fernandes de Macêdo, Melissa Lemos, Sérgio Lifschitz, Antonio Basílio de Miranda, Marcelo Alves, Wim M. Degrave: A Conceptual Model for Molecular Biology Information. 47-56
Shaila C. Rössle, Paulo Carvalho, Laurent Emmanuel Dardenne, Paulo Mascarello Bisch: Development of a Computational Environment for Protein Structure Prediction and Functional Analysis. 57-63
Natalia Martins: Theoretical studies in a K49 PLA2 from snake venom Bothrops neuwiedi pauloensis. 64-71

Algorithms

Zanoni Dias, João Meidanis: The Syntenic Distance Problem Using Only Fusions and Fussions. 72-79
Carlos E. R. Alves, Edson Cáceres, Siang W. Song: Computing Maximum Subsequence in Parallel. 80-87
Maria Emilia Telles Walter, Mauro C. Sobrinho: Improving the algorithm of Bafna and Pevzner for the problem of sorting by transpositions. 88-96
Celso C. Ribeiro, Dalessandro Soares Vianna: A genetic algorithm for the phylogeny problem using an optimized crossover strategy based on path-relinking. 97-102
Alair Pereira do Lago, Ilya B. Muchnik, Casimir A. Kulikowski: An O(n⁴) algorithm for alignment with non-overlapping inversions. 103-112

Posters

Fábio L. Custódio, Helio J. C. Barbosa, Laurent Emmanuel Dardenne: A Genetic Algorithm applied to the Three-Dimensional HP Protein Folding Model. 113-116
Carlos Azevedo, Alexandre Plastino, Ana Tereza R. Vasconcelos: Procsimo: uma Ferramenta de Procura de Similaridade entre Operons. 117-120
Marcelo Perez, Patrícia Carrião, João C. Setubal: A relational database for COG data. 121-124
Heitor S. Lopes, Adilson Dias: Extracting knowledge from the p53 mutation database: the influence of tabagism in the somatic mutations profile of lung cancer subjects. 125-128
Nalvo F. de Almeida Jr., Luciana Montera: Determinação de regiões ortólogas múltiplas. 129-132
Felipe G. Leite, Luiz A. G. da Costa, Fernanda Araujo Baião, Marta Mattoso: Publishing and Querying Blast Results Using Grid Services. 133-136
Fabricio Teixeira, Maria Cláudia Cavalcanti, Fernanda Araujo Baião, Luiz A. V. C. Meyer, Shaila C. Rössle, Paulo Mascarello Bisch, Marta Mattoso: Data Management via Web Services in Bioinformatics Workflows. 137-140
Fatima Cristina Gonçalves, Marta Mattoso, Maria Cláudia Cavalcanti: Genetic Schema Mapping Support. 141-144
Flavia P. Agostini, Carla Osthoff, Pedro G. Pascutti, Alex Vassalo, Diogo Pinto: A Grid Alternative Solution for Protein Folding Studies Applications. 145-148
Francisco Prosdocimi, Fabiano Peixoto, J. Miguel Ortega: DNA Sequences Base Calling by PHRED: Error. 149-152
Wellington Martins, Simone Vasconcelos, David Bertioli: A Software Tool to Aid in the Search for Intron Markers derived from EST data. 153-156
Tiago Adriano de Knegt López de Prado, Wagner Meira Jr., Marcelo M. Santoro, Márcio de Carvalho, Rodrigo L. Carceroni, Carlos H. Silveira, Raquel C. de Melo, Fabiano A. Fonseca: Using Structural Signatures for Identifying Globins: the Intra-Subunit Electrostatic Interactions. 157-160
Cleverson Veronez, Carla Osthoff, Pedro G. Pascutti: HIV-I Protease Mutants Molecular Dynamics Research on Grid Computing Environment. 161-164
Thiago S. Rodrigues, Lucila Pacifico, Santuza Teixeira, Sergio Oliveira, Antônio de Pádua Braga: Amino Acid Coding with Sliding Window Technique. 165-168
Marcos M. C. Costa, Roberto C. Togawa, Robson P. Miranda, Georgios Joannis Pappas Jr.: Distributed blast using grid service technology. 169-172
Rogério Luís de Carvalho Costa, Sérgio Lifschitz: Skew Handling for Parallel BLAST Processing. 173-176