| 2009 | ||
|---|---|---|
| 88 | Doheon Lee, Russ B. Altman, Min Song, Jun Huan: Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009 ACM 2009 | |
| 87 | Yael Garten, Russ B. Altman: Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. BMC Bioinformatics 10(S-2): (2009) | |
| 2008 | ||
| 86 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008 World Scientific 2008 | |
| 85 | Russ B. Altman: Text mining for pharmacogenomics. DTMBIO 2008: 1-2 | |
| 84 | Dariya S. Glazer, Randall J. Radmer, Russ B. Altman: Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition. Pacific Symposium on Biocomputing 2008: 332-343 | |
| 83 | Bernie J. Daigle Jr., Russ B. Altman: M-BISON: Microarray-based integration of data sources using networks. BMC Bioinformatics 9: (2008) | |
| 82 | Graham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe: MScanner: a classifier for retrieving Medline citations. BMC Bioinformatics 9: (2008) | |
| 81 | Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman: Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 534-545 (2008) | |
| 80 | Tina Hernandez-Boussard, Michelle Whirl Carrillo, Joan M. Hebert, Li Gong, Ryan Owen, Mei Gong, Winston Gor, Feng Liu, Chuong Truong, Ryan Whaley, Mark Woon, Tina Zhou, Russ B. Altman, Teri E. Klein: The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge. Nucleic Acids Research 36(Database-Issue): 913-918 (2008) | |
| 2007 | ||
| 79 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007 World Scientific 2007 | |
| 78 | Russ B. Altman: Combining Simulation and Machine Learning to Recognize Function in 4D. BIBM 2007: 3 | |
| 77 | Rong Xu, Yael Garten, Kaustubh S. Supekar, Amar K. Das, Russ B. Altman, Alan M. Garber: Extracting Subject Demographic Information From Abstracts of Randomized Clinical Trial Reports. MedInfo 2007: 550-554 | |
| 76 | Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman: Clustering protein environments for function prediction: finding PROSITE motifs in 3D. BMC Bioinformatics 8(S-4): (2007) | |
| 75 | Russ B. Altman: Current progress in bioinformatics 2007. Briefings in Bioinformatics 8(5): 277-278 (2007) | |
| 74 | Russ B. Altman, Teri E. Klein: Biomedical informatics training at Stanford in the 21st century. Journal of Biomedical Informatics 40(1): 55-58 (2007) | |
| 2006 | ||
| 73 | Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006 World Scientific 2006 | |
| 72 | Scott L. Delp, F. Clayton Anderson, Russ B. Altman: Physics-based simulation of biological structures. ISBI 2006: 802-805 | |
| 71 | Russ B. Altman: Annual Progress in Bioinformatics 2006. Briefings in Bioinformatics 7(3): 209-210 (2006) | |
| 70 | Tu Minh Phuong, Zhen Lin, Russ B. Altman: Choosing Snps Using Feature Selection. J. Bioinformatics and Computational Biology 4(2): 241-258 (2006) | |
| 2005 | ||
| 69 | Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005 World Scientific 2005 | |
| 68 | Russ B. Altman: Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures. CSB 2005: 3 | |
| 67 | Tu Minh Phuong, Zhen Lin, Russ B. Altman: Choosing SNPs Using Feature Selection. CSB 2005: 301-309 | |
| 66 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2005 | |
| 65 | Russ B. Altman: Editorial: Annual progress in bioinformatics. Briefings in Bioinformatics 6(1): 4-5 (2005) | |
| 64 | Jonathan D. Wren, Jeffrey T. Chang, James Pustejovsky, Eytan Adar, Harold R. Garner, Russ B. Altman: Biomedical term mapping databases. Nucleic Acids Research 33(Database-Issue): 289-293 (2005) | |
| 2004 | ||
| 63 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein: Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004 World Scientific 2004 | |
| 62 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2004 | |
| 61 | Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwartz, Russ B. Altman, Marti A. Hearst: Tools for loading MEDLINE into a local relational database. BMC Bioinformatics 5: 146 (2004) | |
| 60 | Jeffrey T. Chang, Hinrich Schütze, Russ B. Altman: GAPSCORE: finding gene and protein names one word at a time. Bioinformatics 20(2): 216-225 (2004) | |
| 59 | Russ B. Altman: Editorial: Building successful biological databases. Briefings in Bioinformatics 5(1): 4 (2004) | |
| 2003 | ||
| 58 | Shuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman: A Personalized and Automated dbSNP Surveillance System. CSB 2003: 132-136 | |
| 57 | Mike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automatic Construction of 3D Structural Motifs for Protein Function Prediction. CSB 2003: 613-614 | |
| 56 | Mike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. Pacific Symposium on Biocomputing 2003: 204-215 | |
| 55 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2003 | |
| 54 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Special Paper - Introduction. Pacific Symposium on Biocomputing 2003: 636-637 | |
| 53 | Miles Osborne, Mark Cuminskey, Gail Sinclair, Matthew Smillie, Bonnie L. Webber, Jeffrey T. Chang, Nipun Mehra, Veronica Rotemberg, Russ B. Altman: Edinburgh-Stanford TREC-2003 Genomics Track. TREC 2003: 622-630 | |
| 52 | Sean D. Mooney, Russ B. Altman: MutDB: annotating human variation with functionally relevant data. Bioinformatics 19(14): 1858-1860 (2003) | |
| 51 | Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman: Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics 19(2): 241-248 (2003) | |
| 50 | Soumya Raychaudhuri, Russ B. Altman: A literature-based method for assessing the functional coherence of a gene group. Bioinformatics 19(3): 396-401 (2003) | |
| 49 | Liping Wei, Russ B. Altman: Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function. J. Bioinformatics and Computational Biology 1(1): 119-138 (2003) | |
| 48 | Soumya Raychaudhuri, Hinrich Schütze, Russ B. Altman: Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data. Machine Learning 52(1-2): 119-145 (2003) | |
| 47 | Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman: WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Research 31(13): 3324-3327 (2003) | |
| 46 | Russ B. Altman: Complexities of Managing Biomedical Information. OMICS 7(1): 127-130 (2003) | |
| 2002 | ||
| 45 | Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman: Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models. ISMB 2002: 207-215 | |
| 44 | Diane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman: Ontology Development for a Pharmacogenetics Knowledge Base. Pacific Symposium on Biocomputing 2002: 65-76 | |
| 43 | Daniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman: Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML. Pacific Symposium on Biocomputing 2002: 88-99 | |
| 42 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2002 | |
| 41 | Olga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, Russ B. Altman: Nonparametric methods for identifying differentially expressed genes in microarray data. Bioinformatics 18(11): 1454-1461 (2002) | |
| 40 | Mor Peleg, Iwei Yeh, Russ B. Altman: Modelling biological processes using workflow and Petri Net models. Bioinformatics 18(6): 825-837 (2002) | |
| 39 | Jiawei Han, Russ B. Altman, Vipin Kumar, Heikki Mannila, Daryl Pregibon: Emerging scientific applications in data mining. Commun. ACM 45(8): 54-58 (2002) | |
| 38 | Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein: PharmGKB: the Pharmacogenetics Knowledge Base. Nucleic Acids Research 30(1): 163-165 (2002) | |
| 2001 | ||
| 37 | Russ B. Altman: Challenges for knowledge discovery in biology. KDD 2001: 2 | |
| 36 | D. Rey Banatao, Conrad C. Huang, Patricia C. Babbitt, Russ B. Altman, Teri E. Klein: ViewFeature: Integrated Feature Analysis and Visualization. Pacific Symposium on Biocomputing 2001: 240-250 | |
| 35 | Allison Waugh, Glenn A. Williams, Liping Wei, Russ B. Altman: Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases. Pacific Symposium on Biocomputing 2001: 360-371 | |
| 34 | Jeffrey T. Chang, Soumya Raychaudhuri, Russ B. Altman: Including Biological Literature Improves Homology Search. Pacific Symposium on Biocomputing 2001: 374-383 | |
| 33 | Olga G. Troyanskaya, Michael Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman: Missing value estimation methods for DNA microarrays. Bioinformatics 17(6): 520-525 (2001) | |
| 32 | Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan: Challenges for Intelligent Systems in Biology. IEEE Intelligent Systems 16(6): 14-20 (2001) | |
| 31 | Glenn A. Williams, Jonathan M. Dugan, Russ B. Altman: Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances. Journal of Computational Biology 8(5): 523-548 (2001) | |
| 2000 | ||
| 30 | Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig: Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA AAAI 2000 | |
| 29 | Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman: Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains. ISMB 2000: 286-295 | |
| 1999 | ||
| 28 | Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Biomolecular Structure Estimation: A Case Study of Irregular Hierarchical Parallelism. PPSC 1999 | |
| 27 | Russ B. Altman: AI in Medicine: The Spectrum of Challenges from Managed Care to Molecular Medicine. AI Magazine 20(3): 67-77 (1999) | |
| 26 | Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Using imperfect secondary structure predictions to improve molecular structure computations. Bioinformatics 15(1): 53-65 (1999) | |
| 25 | Russ B. Altman, Michael Bada, Xiaoqian J. Chai, Michelle Whirl Carrillo, Richard O. Chen, Neil F. Abernethy: RiboWeb: An Ontology-Based System for Collaborative Molecular Biology. IEEE Intelligent Systems 14(5): 68-76 (1999) | |
| 1998 | ||
| 24 | Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman: A Surface Measure for Probabilistic Structural Computations. ISMB 1998: 148-156 | |
| 23 | Neil F. Abernethy, Russ B. Altman: Sophia: Providing Basic Knowledge Services with a Common DBMS. KRDB 1998: 1.1-1.6 | |
| 22 | Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: The hierarchical organization of molecular structure computations. RECOMB 1998: 51-59 | |
| 21 | Russ B. Altman: A curriculum for bioinformatics: the time is ripe. Bioinformatics 14(7): 549-550 (1998) | |
| 20 | John H. Gennari, Heyning Cheng, Russ B. Altman, Mark A. Musen: Reuse, CORBA, and knowledge-based systems. Int. J. Hum.-Comput. Stud. 49(4): 523-546 (1998) | |
| 19 | Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman: Hierarchical Organization of Molecular Structure Computations. Journal of Computational Biology 5(3): 409-422 (1998) | |
| 1997 | ||
| 18 | Russ B. Altman, Neil F. Abernethy, Richard O. Chen: Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data. ISMB 1997: 15-24 | |
| 17 | Richard O. Chen, Ramon M. Felciano, Russ B. Altman: RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data. ISMB 1997: 84-87 | |
| 1996 | ||
| 16 | Cheng Che Chen, Richard O. Chen, Russ B. Altman: Constraining volume by matching the moments of a distance distribution. Computer Applications in the Biosciences 12(4): 319-326 (1996) | |
| 1995 | ||
| 15 | Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak: Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995 AAAI 1995 | |
| 14 | Steven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman: Characterizing Oriented Protein Structural Sites Using Biochemical Properties. ISMB 1995: 12-20 | |
| 13 | John H. Gennari, Russ B. Altman, Mark A. Musen: Reuse with PROTÉgÉ-II: From Elevators to Ribosomes. SSR 1995: 72-80 | |
| 12 | Mark Gerstein, Russ B. Altman: Using a measure of structural variation to define a core for the globins. Computer Applications in the Biosciences 11(6): 633-644 (1995) | |
| 11 | Russ B. Altman: A probabilistic approach to determining biological structure: integrating uncertain data sources. Int. J. Hum.-Comput. Stud. 42(6): 593-616 (1995) | |
| 1994 | ||
| 10 | Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls: Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA AAAI 1994 | |
| 9 | Russ B. Altman, Bryn Weiser, Harry F. Noller: Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA. ISMB 1994: 10-18 | |
| 8 | Russ B. Altman, Mark Gerstein: Finding an Average Core Structure: Application to the Globins. ISMB 1994: 19-27 | |
| 7 | Cheng Che Chen, Jaswinder Pal Singh, William B. Poland, Russ B. Altman: Parallel protein structure determination from uncertain data. SC 1994: 570-579 | |
| 6 | Russ B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh: Probabilistic Constraint Satisfaction with Non-Gaussian Noise. UAI 1994: 15-22 | |
| 1993 | ||
| 5 | Russ B. Altman: Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data. ISMB 1993: 12-20 | |
| 4 | Russ B. Altman: A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing. UAI 1993: 23-31 | |
| 1988 | ||
| 3 | James F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky: Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562. Journal of Chemical Information and Computer Sciences 28(4): 194-210 (1988) | |
| 1987 | ||
| 2 | Russ B. Altman, Bruce G. Buchanan: Partial Compilation of Strategic Knowledge. AAAI 1987: 399-404 | |
| 1986 | ||
| 1 | Barbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce S. Duncan, Oleg Jardetzky: PROTEAN: Deriving Protein Structure from Constraints. AAAI 1986: 904-909 | |