Kiyoshi Asai

	2009
39		Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara: A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. WABI 2009: 286-297
38		Yasuo Tabei, Kiyoshi Asai: A local multiple alignment method for detection of non-coding RNA sequences. Bioinformatics 25(12): 1498-1505 (2009)
37		Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai: Predictions of RNA secondary structure by combining homologous sequence information. Bioinformatics 25(12): (2009)
36		Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai: Prediction of RNA secondary structure using generalized centroid estimators. Bioinformatics 25(4): 465-473 (2009)
35		Toutai Mituyama, Kouichirou Yamada, Emi Hattori, Hiroaki Okida, Yukiteru Ono, Goro Terai, Aya Yoshizawa, Takashi Komori, Kiyoshi Asai: The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs. Nucleic Acids Research 37(Database-Issue): 89-92 (2009)
34		Kengo Sato, Michiaki Hamada, Kiyoshi Asai, Toutai Mituyama: CENTROIDFOLD: a web server for RNA secondary structure prediction. Nucleic Acids Research 37(Web-Server-Issue): 277-280 (2009)
	2008
33		Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai: A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: (2008)
32		Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara: Directed acyclic graph kernels for structural RNA analysis. BMC Bioinformatics 9: (2008)
31		Hisanori Kiryu, Taishin Kin, Kiyoshi Asai: Rfold: an exact algorithm for computing local base pairing probabilities. Bioinformatics 24(3): 367-373 (2008)
30		Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama: Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Research 36(Web-Server-Issue): 75-78 (2008)
	2007
29		Kinya Okada, Kiyoshi Asai, Masanori Arita: Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. APBC 2007: 317-326
28		Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato: Stem Kernels for RNA Sequence Analyses. BIRD 2007: 278-291
27		Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama, Kiyoshi Asai: Multi-Task Learning via Conic Programming. NIPS 2007
26		Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai: Murlet: a practical multiple alignment tool for structural RNA sequences. Bioinformatics 23(13): 1588-1598 (2007)
25		Hisanori Kiryu, Taishin Kin, Kiyoshi Asai: Robust prediction of consensus secondary structures using averaged base pairing probability matrices. Bioinformatics 23(4): 434-441 (2007)
24		Yasubumi Sakakibara, Kris Popendorf, Nana Ogawa, Kiyoshi Asai, Kengo Sato: Stem Kernels for RNA Sequence Analyses. J. Bioinformatics and Computational Biology 5(5): 1103-1122 (2007)
23		Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, Kiyoshi Asai: fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. Nucleic Acids Research 35(Database-Issue): 145-148 (2007)
	2006
22		Tsuyoshi Kato, Yukio Murata, Koh Miura, Kiyoshi Asai, Paul Horton, Koji Tsuda, Wataru Fujibuchi: Network-based de-noising improves prediction from microarray data. BMC Bioinformatics 7(S-1): (2006)
21		Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai: SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. Bioinformatics 22(14): 1723-1729 (2006)
20		Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai: Mining frequent stem patterns from unaligned RNA sequences. Bioinformatics 22(20): 2480-2487 (2006)
	2005
19		Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai: Selective integration of multiple biological data for supervised network inference. Bioinformatics 21(10): 2488-2495 (2005)
18		Hisanori Kiryu, Taku Oshima, Kiyoshi Asai: Extracting relations between promoter sequences and their strengths from microarray data. Bioinformatics 21(7): 1062-1068 (2005)
17		Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai: Accurate extraction of functional associations between proteins based on common interaction partners and common domains. Bioinformatics 21(9): 2043-2048 (2005)
	2004
16		Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai: A New Variational Framework for Rigid-Body Alignment. SSPR/SPR 2004: 171-179
15		Koji Tsuda, Shinsuke Uda, Taishin Kin, Kiyoshi Asai: Minimizing the Cross Validation Error to Mix Kernel Matrices of Heterogeneous Biological Data. Neural Processing Letters 19(1): 63-72 (2004)
	2003
14		Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono, Hitoshi Iba: GA-Based Inference of Euler Angles for Single Particle Analysis. GECCO 2003: 2288-2300
13		Koji Tsuda, Shotaro Akaho, Kiyoshi Asai: The em Algorithm for Kernel Matrix Completion with Auxiliary Data. Journal of Machine Learning Research 4: 67-81 (2003)
	2002
12		Masanori Arita, Koji Tsuda, Kiyoshi Asai: Modeling splicing sites with pairwise correlations. ECCB 2002: 27-34
11		Koji Tsuda, Taishin Kin, Kiyoshi Asai: Marginalized kernels for biological sequences. ISMB 2002: 268-275
10		Koji Tsuda, Shotaro Akaho, Kiyoshi Asai: Approximating Incomplete Kernel Matrices by the em Algorithm CoRR cs.LG/0211007: (2002)
	2000
9		Masanori Arita, Kiyoshi Asai, Takaaki Nishioka: Reconstructing Metabolic Pathways with New Enzyme Classification. German Conference on Bioinformatics 2000: 99-106
	1998
8		Tetsushi Yada, Yasushi Totoki, Masato Ishikawa, Kiyoshi Asai, Kenta Nakai: Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. Bioinformatics 14(4): 317-325 (1998)
	1997
7		Yutaka Ueno, Kiyoshi Asai: A New Plug-In Software Architecture Applied for a Portable Molecular Structure Browser. ISMB 1997: 329-332
	1994
6		Masayuki Akahoshi, Kentaro Onizuka, Masato Ishikawa, Kiyoshi Asai: A Three-Dimensional Animation System for Protein Folding Simulation. HICSS (5) 1994: 173-182
5		Kentaro Onizuka, Hiroshi Tsuda, Masato Ishikawa, Akira Aiba, Kiyoshi Asai, Katunobu Ito: Protein Structure Prediction Based on Multi-Level Description. HICSS (5) 1994: 355-364
4		Kentaro Onizuka, Masayuki Akahosi, Masato Ishikawa, Kiyoshi Asai: The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein. ISMB 1994: 314-321
	1993
3		Kentaro Onizuka, Stephen T. C. Wong, Masato Ishikawa, Kiyoshi Asai: A Multi-Level Description Scheme of Protein Conformation. ISMB 1993: 301-309
2		Hidetoshi Tanaka, Masato Ishikawa, Kiyoshi Asai, Akihiko Konagaya: Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. ISMB 1993: 395-401
1		Kiyoshi Asai, Satoru Hayamizu, Ken'ichi Handa: Prediction of protein secondary structure by the hidden Markov model. Computer Applications in the Biosciences 9(2): 141-146 (1993)

Coauthor Index

1	Akira Aiba	[5]
2	Shotaro Akaho	[10] [13]
3	Masayuki Akahoshi	[6]
4	Masayuki Akahosi	[4]
5	Masanori Arita	[9] [12] [29]
6	Wataru Fujibuchi	[22]
7	Michiaki Hamada	[20] [30] [34] [36] [37] [39]
8	Ken'ichi Handa	[1]
9	Emi Hattori	[35]
10	Satoru Hayamizu	[1]
11	Paul Horton	[22]
12	Hitoshi Iba	[14]
13	Masato Ishikawa	[2] [3] [4] [5] [6] [8]
14	Katsunori Isono	[14]
15	Katunobu Ito	[5]
16	Shigehiko Kanaya	[17]
17	Hisashi Kashima	[27]
18	Tsuyoshi Kato	[16] [19] [22] [27]
19	Yuki Kimura	[23]
20	Taishin Kin	[11] [15] [20] [21] [23] [25] [26] [31] [33]
21	Hisanori Kiryu	[18] [25] [26] [30] [31] [33] [36] [37]
22	Aya Kojima	[23]
23	Takashi Komori	[23] [35]
24	Akihiko Konagaya	[2]
25	Taku Kudo	[20]
26	Hiroshi Matsui	[30]
27	Toutai Mituyama	[30] [32] [34] [35] [36] [37] [39]
28	Koh Miura	[22]
29	Yukio Murata	[22]
30	Kenta Nakai	[8]
31	Takaaki Nishioka	[9]
32	Nana Ogawa	[24]
33	Kinya Okada	[17] [29]
34	Hiroaki Okida	[23] [35]
35	Kentaro Onizuka	[3] [4] [5] [6]
36	Yukiteru Ono	[23] [35]
37	Taku Oshima	[18]
38	Kris Popendorf	[24]
39	Shusuke Saeki	[14]
40	Yasubumi Sakakibara	[24] [28] [30] [32] [39]
41	Kengo Sato	[24] [28] [30] [32] [34] [36] [37] [39]
42	Masashi Sugiyama	[27]
43	Yasuo Tabei	[21] [26] [30] [33] [38]
44	Katsutoshi Takahashi	[14]
45	Hidetoshi Tanaka	[2]
46	Goro Terai	[23] [30] [35]
47	Kentaro Tomii	[16]
48	Yasushi Totoki	[8]
49	Hiroshi Tsuda	[5]
50	Koji Tsuda	[10] [11] [12] [13] [15] [16] [19] [20] [21] [22]
51	Shinsuke Uda	[15]
52	Yutaka Ueno	[7] [14]
53	Stephen T. C. Wong	[3]
54	Tetsushi Yada	[8]
55	Kouichirou Yamada	[23] [35]
56	Yasuhiko Yoshinari	[23]
57	Aya Yoshizawa	[35]