Teresa K. Attwood
List of publications from the
 | 2012 |
| 52 |  | Sarah Hunter,
Philip Jones,
Alex Mitchell,
Rolf Apweiler,
Teresa K. Attwood,
Alex Bateman,
Thomas Bernard,
David Binns,
Peer Bork,
Sarah Burge,
Edouard De Castro,
Penny C. Coggill,
Matthew Corbett,
Ujjwal Das,
Louise Daugherty,
Lauranne Duquenne,
Robert D. Finn,
Matthew Fraser,
Julian Gough,
Daniel H. Haft,
Nicolas Hulo,
Daniel Kahn,
Elizabeth Kelly,
Ivica Letunic,
David Lonsdale,
Rodrigo Lopez,
Martin Madera,
John Maslen,
Craig McAnulla,
Jennifer McDowall,
Conor McMenamin,
Huaiyu Mi,
Prudence Mutowo-Muellenet,
Nicola J. Mulder,
Darren A. Natale,
Christine A. Orengo,
Sebastien Pesseat,
Marco Punta,
Antony F. Quinn,
Catherine Rivoire,
Amaia Sangrador-Vegas,
Jeremy D. Selengut,
Christian J. A. Sigrist,
Maxim Scheremetjew,
John G. Tate,
Manjulapramila Thimmajanarthanan,
Paul D. Thomas,
Cathy H. Wu,
Corin Yeats,
Siew-Yit Yong:
InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Research 40(Database-Issue): 306-312 (2012) |
| 51 |  | Bas Vroling,
David Thorne,
Philip McDermott,
Henk-Jan Joosten,
Teresa K. Attwood,
Steve Pettifer,
Gert Vriend:
NucleaRDB: information system for nuclear receptors.
Nucleic Acids Research 40(Database-Issue): 377-380 (2012) |
| 2011 |
| 50 |  | Bas Vroling,
David Thorne,
Philip McDermott,
Teresa K. Attwood,
Gert Vriend,
Steve Pettifer:
Integrating GPCR-specific information with full text articles.
BMC Bioinformatics 12: 362 (2011) |
| 49 |  | Pascale Gaudet,
Amos Bairoch,
Dawn Field,
Susanna-Assunta Sansone,
Chris F. Taylor,
Teresa K. Attwood,
Alex Bateman,
Judith A. Blake,
Carol J. Bult,
J. Michael Cherry,
Rex L. Chisholm,
Guy Cochrane,
Charles E. Cook,
Janan T. Eppig,
Michael Y. Galperin,
Robert Gentleman,
Carole A. Goble,
Takashi Gojobori,
John M. Hancock,
Douglas G. Howe,
Tadashi Imanishi,
Janet Kelso,
David Landsman,
Suzanna E. Lewis,
Ilene Karsch-Mizrachi,
Sandra E. Orchard,
B. F. Francis Ouellette,
Shoba Ranganathan,
Lorna Richardson,
Philippe Rocca-Serra,
Paul N. Schofield,
Damian Smedley,
Christopher Southan,
Tin Wee Tan,
Tatiana A. Tatusova,
Patricia L. Whetzel,
Owen White,
Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Research 39(Database-Issue): 7-10 (2011) |
| 48 |  | Allegra Via,
Javier De Las Rivas,
Teresa K. Attwood,
David Landsman,
Michelle D. Brazas,
Jack A. M. Leunissen,
Anna Tramontano,
Maria Victoria Schneider:
Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Computational Biology 7(10): (2011) |
| 2010 |
| 47 |  | Terri K. Attwood,
Douglas B. Kell,
Philip McDermott,
James Marsh,
Stephen Pettifer,
David Thorne:
Utopia documents: linking scholarly literature with research data.
Bioinformatics 26(18): (2010) |
| 46 |  | Maria Victoria Schneider,
James Watson,
Teresa K. Attwood,
Kristian Rother,
Aidan Budd,
Jennifer McDowall,
Allegra Via,
Pedro Fernandes,
Tommi H. Nyrönen,
Thomas Blicher,
Philip Jones,
Marie-Claude Blatter,
Javier De Las Rivas,
David Phillip Judge,
Wouter van der Gool,
Catherine Brooksbank:
Bioinformatics training: a review of challenges, actions and support requirements.
Briefings in Bioinformatics 11(6): 544-551 (2010) |
| 45 |  | Steve Pettifer,
Jon C. Ison,
Matús Kalas,
Dave Thorne,
Philip McDermott,
Inge Jonassen,
Ali Liaquat,
José María Fernández,
Jose Manuel Rodriguez,
David G. Pisano,
Christophe Blanchet,
Mahmut Uludag,
Peter M. Rice,
Edita Bartaseviciute,
Kristoffer Rapacki,
Maarten L. Hekkelman,
Olivier Sand,
Heinz Stockinger,
Andrew B. Clegg,
Erik Bongcam-Rudloff,
Jean Salzemann,
Vincent Breton,
Teresa K. Attwood,
Graham Cameron,
Gert Vriend:
The EMBRACE web service collection.
Nucleic Acids Research 38(Web-Server-Issue): 683-688 (2010) |
| 44 |  | Maarten L. Hekkelman,
Tim A. H. te Beek,
Steve Pettifer,
David Thorne,
Terri K. Attwood,
Gert Vriend:
WIWS: a protein structure bioinformatics Web service collection.
Nucleic Acids Research 38(Web-Server-Issue): 719-723 (2010) |
| 2009 |
| 43 |  | Steve Pettifer,
David Thorne,
Philip McDermott,
James Marsh,
Alice Villéger,
Douglas B. Kell,
Teresa K. Attwood:
Visualising biological data: a semantic approach to tool and database integration.
BMC Bioinformatics 10(S-6): (2009) |
| 42 |  | Steve Pettifer,
David Thorne,
Philip McDermott,
Terri K. Attwood,
J. Baran,
Jan Christian Bryne,
Taavi Hupponen,
D. Mowbray,
Gert Vriend:
An active registry for bioinformatics web services.
Bioinformatics 25(16): 2090-2091 (2009) |
| 41 |  | Sarah Hunter,
Rolf Apweiler,
Teresa K. Attwood,
Amos Bairoch,
Alex Bateman,
David Binns,
Peer Bork,
Ujjwal Das,
Louise Daugherty,
Lauranne Duquenne,
Robert D. Finn,
Julian Gough,
Daniel H. Haft,
Nicolas Hulo,
Daniel Kahn,
Elizabeth Kelly,
Aurélie Laugraud,
Ivica Letunic,
David Lonsdale,
Rodrigo Lopez,
Martin Madera,
John Maslen,
Craig McAnulla,
Jennifer McDowall,
Jaina Mistry,
Alex Mitchell,
Nicola J. Mulder,
Darren A. Natale,
Christine A. Orengo,
Antony F. Quinn,
Jeremy D. Selengut,
Christian J. A. Sigrist,
Manjula Thimma,
Paul D. Thomas,
Franck Valentin,
Derek Wilson,
Cathy H. Wu,
Corin Yeats:
InterPro: the integrative protein signature database.
Nucleic Acids Research 37(Database-Issue): 211-215 (2009) |
| 40 |  | Jane E. Mabey Gilsenan,
Graham Atherton,
Jennifer Bartholomew,
Peter F. Giles,
Teresa K. Attwood,
David W. Denning,
Paul Bowyer:
Aspergillus Genomes and the Aspergillus Cloud.
Nucleic Acids Research 37(Database-Issue): 509-514 (2009) |
| 2008 |
| 39 |  | Heinz Stockinger,
Teresa K. Attwood,
Shahid Nadeem Chohan,
Richard G. Côté,
Philippe Cudré-Mauroux,
Laurent Falquet,
Pedro Fernandes,
Robert D. Finn,
Taavi Hupponen,
Eija Korpelainen,
Alberto Labarga,
Aurélie Laugraud,
Tania Lima,
Evangelos Pafilis,
Marco Pagni,
Steve Pettifer,
Isabelle Phan,
Nazim Rahman:
Experience using web services for biological sequence analysis.
Briefings in Bioinformatics 9(6): 493-505 (2008) |
| 2007 |
| 38 |  | Steve Pettifer,
Katy Wolstencroft,
Pinar Alper,
Teresa K. Attwood,
Alain Coletta,
Carole A. Goble,
Peter Li,
Philip McDermott,
James Marsh,
Tom Oinn,
James Sinnott,
David Thorne:
myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences.
DILS 2007: 59-70 |
| 37 |  | Jee-Hyub Kim,
Alex Mitchell,
Teresa K. Attwood,
Melanie Hilario:
Learning to extract relations for protein annotation.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 256-263 |
| 36 |  | Nicola J. Mulder,
Rolf Apweiler,
Teresa K. Attwood,
Amos Bairoch,
Alex Bateman,
David Binns,
Peer Bork,
Virginie Buillard,
Lorenzo Cerutti,
Richard R. Copley,
Emmanuel Courcelle,
Ujjwal Das,
Louise Daugherty,
Mark Dibley,
Robert D. Finn,
Wolfgang Fleischmann,
Julian Gough,
Daniel H. Haft,
Nicolas Hulo,
Sarah Hunter,
Daniel Kahn,
Alexander Kanapin,
Anish Kejariwal,
Alberto Labarga,
Petra S. Langendijk-Genevaux,
David Lonsdale,
Rodrigo Lopez,
Ivica Letunic,
Martin Madera,
John Maslen,
Craig McAnulla,
Jennifer McDowall,
Jaina Mistry,
Alex Mitchell,
Anastasia N. Nikolskaya,
Sandra E. Orchard,
Christine A. Orengo,
Robert Petryszak,
Jeremy D. Selengut,
Christian J. A. Sigrist,
Paul D. Thomas,
Franck Valentin,
Derek Wilson,
Cathy H. Wu,
Corin Yeats:
New developments in the InterPro database.
Nucleic Acids Research 35(Database-Issue): 224-228 (2007) |
| 2005 |
| 35 |  | Alex Mitchell,
Anna Divoli,
Jee-Hyub Kim,
Melanie Hilario,
I. Selimas,
Teresa K. Attwood:
METIS: multiple extraction techniques for informative sentences.
Bioinformatics 21(22): 4196-4197 (2005) |
| 34 |  | Anna Divoli,
Teresa K. Attwood:
BioIE: extracting informative sentences from the biomedical literature.
Bioinformatics 21(9): 2138-2139 (2005) |
| 33 |  | Nicola J. Mulder,
Rolf Apweiler,
Teresa K. Attwood,
Amos Bairoch,
Alex Bateman,
David Binns,
Paul Bradley,
Peer Bork,
Phillip Bucher,
Lorenzo Cerutti,
Richard R. Copley,
Emmanuel Courcelle,
Ujjwal Das,
Richard Durbin,
Wolfgang Fleischmann,
Julian Gough,
Daniel H. Haft,
Nicola Harte,
Nicolas Hulo,
Daniel Kahn,
Alexander Kanapin,
Maria Krestyaninova,
David Lonsdale,
Rodrigo Lopez,
Ivica Letunic,
Martin Madera,
John Maslen,
Jennifer McDowall,
Alex Mitchell,
Anastasia N. Nikolskaya,
Sandra E. Orchard,
Marco Pagni,
Chris P. Ponting,
Emmanuel Quevillon,
Jeremy D. Selengut,
Christian J. A. Sigrist,
Ville Silventoinen,
David J. Studholme,
Robert Vaughan,
Cathy H. Wu:
InterPro, progress and status in 2005.
Nucleic Acids Research 33(Database-Issue): 201-205 (2005) |
| 2004 |
| 32 |  | Melanie Hilario,
Alex Mitchell,
Jee-Hyub Kim,
Paul Bradley,
Terri K. Attwood:
Classifying Protein Fingerprints.
PKDD 2004: 197-208 |
| 31 |  | J. E. Mabey,
M. J. Anderson,
Peter F. Giles,
Crispin J. Miller,
Terri K. Attwood,
Norman W. Paton,
Erich Bornberg-Bauer,
G. D. Robson,
Stephen G. Oliver,
David W. Denning:
CADRE: the Central Aspergillus Data REpository.
Nucleic Acids Research 32(Database-Issue): 401-405 (2004) |
| 30 |  | Neil Maudling,
Terri K. Attwood:
FAN: fingerprint analysis of nucleotide sequences.
Nucleic Acids Research 32(Web-Server-Issue): 620-623 (2004) |
| 2003 |
| 29 |  | Alex Mitchell,
Jacqueline Renée Reich,
Terri K. Attwood:
PRECIS: Protein reports engineered from concise information in SWISS-PROT.
Bioinformatics 19(13): 1664-1671 (2003) |
| 28 |  | Nicola J. Mulder,
Rolf Apweiler,
Terri K. Attwood,
Amos Bairoch,
Daniel Barrell,
Alex Bateman,
David Binns,
Margaret Biswas,
Paul Bradley,
Peer Bork,
Philipp Bucher,
Richard R. Copley,
Emmanuel Courcelle,
Ujjwal Das,
Richard Durbin,
Laurent Falquet,
Wolfgang Fleischmann,
Sam Griffiths-Jones,
Daniel H. Haft,
Nicola Harte,
Nicolas Hulo,
Daniel Kahn,
Alexander Kanapin,
Maria Krestyaninova,
Rodrigo Lopez,
Ivica Letunic,
David Lonsdale,
Ville Silventoinen,
Sandra E. Orchard,
Marco Pagni,
David Peyruc,
Chris P. Ponting,
Jeremy D. Selengut,
Florence Servant,
Christian J. A. Sigrist,
Robert Vaughan,
Evgeni M. Zdobnov:
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Research 31(1): 315-318 (2003) |
| 27 |  | Terri K. Attwood,
Paul Bradley,
Darren R. Flower,
Anna Gaulton,
Neil Maudling,
Alex Mitchell,
G. Moulton,
A. Nordle,
K. Paine,
P. Taylor,
A. Uddin,
Christianna Zygouri:
PRINTS and its automatic supplement, prePRINTS.
Nucleic Acids Research 31(1): 400-402 (2003) |
| 26 |  | Anna Gaulton,
Terri K. Attwood:
Motif3D: relating protein sequence motifs to 3D structure.
Nucleic Acids Research 31(13): 3333-3336 (2003) |
| 25 |  | Paul D. Taylor,
Terri K. Attwood,
Darren R. Flower:
BPROMPT: a consensus server for membrane protein prediction.
Nucleic Acids Research 31(13): 3698-3700 (2003) |
| 2002 |
| 24 |  | Phillip W. Lord,
J. N. Selley,
Terri K. Attwood:
CINEMA-MX: a modular multiple alignment editor.
Bioinformatics 18(10): 1402-1403 (2002) |
| 23 |  | Nicola J. Mulder,
Rolf Apweiler,
Terri K. Attwood,
Amos Bairoch,
Alex Bateman,
David Binns,
Margaret Biswas,
Paul Bradley,
Peer Bork,
Philipp Bucher,
Richard R. Copley,
Emmanuel Courcelle,
Richard Durbin,
Laurent Falquet,
Wolfgang Fleischmann,
Jérôme Gouzy,
Sam Griffiths-Jones,
Daniel H. Haft,
Henning Hermjakob,
Nicolas Hulo,
Daniel Kahn,
Alexander Kanapin,
Maria Krestyaninova,
Rodrigo Lopez,
Ivica Letunic,
Sue Orchard,
Marco Pagni,
David Peyruc,
Chris P. Ponting,
Florence Servant,
Christian J. A. Sigrist:
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings in Bioinformatics 3(3): 225-235 (2002) |
| 22 |  | Terri K. Attwood:
The PRINTS Database: A Resource for Identification of Protein Families.
Briefings in Bioinformatics 3(3): 252-264 (2002) |
| 21 |  | Terri K. Attwood,
Martin J. Blythe,
Darren R. Flower,
Anna Gaulton,
J. E. Mabey,
Neil Maudling,
L. McGregor,
Alex Mitchell,
G. Moulton,
K. Paine,
Philip Scordis:
PRINTS and PRINTS-S shed light on protein ancestry.
Nucleic Acids Research 30(1): 239-241 (2002) |
| 2001 |
| 20 |  | Crispin J. Miller,
Terri K. Attwood:
PSST... The Probabilisitic Sequence Search Tool.
BIBE 2001: 33-40 |
| 19 |  | Phillip W. Lord,
Jacqueline Renée Reich,
Alex Mitchell,
Robert D. Stevens,
Terri K. Attwood,
Carole A. Goble:
PRECIS: An Automated Pipeline for Producing Concise Reports About Proteins.
BIBE 2001: 57-64 |
| 18 |  | J. N. Selley,
J. Swift,
Terri K. Attwood:
EASY-an Expert Analysis SYstem for interpreting database search outputs.
Bioinformatics 17(1): 105-106 (2001) |
| 17 |  | Terri K. Attwood,
Crispin J. Miller:
Which Craft Is Best in Bioinformatics?.
Computers & Chemistry 25(4): 329-339 (2001) |
| 16 |  | Jacqueline Renée Reich,
Alex Mitchell,
Carole A. Goble,
Terri K. Attwood:
Toward More Intelligent Annotation Tools: A Prototype.
IEEE Intelligent Systems 16(6): 42-51 (2001) |
| 15 |  | Rolf Apweiler,
Terri K. Attwood,
Amos Bairoch,
Alex Bateman,
Ewan Birney,
Margaret Biswas,
Philipp Bucher,
Lorenzo Cerutti,
Florence Corpet,
Michael D. R. Croning,
Richard Durbin,
Laurent Falquet,
Wolfgang Fleischmann,
Jérôme Gouzy,
Henning Hermjakob,
Nicolas Hulo,
Inge Jonassen,
Daniel Kahn,
Alexander Kanapin,
Youla Karavidopoulou,
Rodrigo Lopez,
Beate Marx,
Nicola J. Mulder,
Thomas M. Oinn,
Marco Pagni,
Florence Servant,
Christian J. A. Sigrist,
Evgeni M. Zdobnov:
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Research 29(1): 37-40 (2001) |
| 2000 |
| 14 |  | Rolf Apweiler,
Terri K. Attwood,
Amos Bairoch,
Alex Bateman,
Ewan Birney,
Margaret Biswas,
Philipp Bucher,
Lorenzo Cerutti,
Florence Corpet,
Michael D. R. Croning,
Richard Durbin,
Laurent Falquet,
Wolfgang Fleischmann,
Jérôme Gouzy,
Henning Hermjakob,
Nicolas Hulo,
Inge Jonassen,
Daniel Kahn,
Alexander Kanapin,
Youla Karavidopoulou,
Rodrigo Lopez,
Beate Marx,
Nicola J. Mulder,
Thomas M. Oinn,
Marco Pagni,
Florence Servant,
Christian J. A. Sigrist,
Evgeni M. Zdobnov:
InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinformatics 16(12): 1145-1150 (2000) |
| 13 |  | Terri K. Attwood:
The Role of Pattern Databases in Sequence Analysis.
Briefings in Bioinformatics 1(1): 45-59 (2000) |
| 12 |  | Terri K. Attwood,
Michael D. R. Croning,
Darren R. Flower,
A. P. Lewis,
J. E. Mabey,
Philip Scordis,
J. N. Selley,
W. Wright:
PRINTS-S: the database formerly known as PRINTS.
Nucleic Acids Research 28(1): 225-227 (2000) |
| 1999 |
| 11 |  | Philip Scordis,
Darren R. Flower,
Terri K. Attwood:
FingerPRINTScan: intelligent searching of the PRINTS motif database.
Bioinformatics 15(10): 799-806 (1999) |
| 10 |  | W. Wright,
Philip Scordis,
Terri K. Attwood:
BLAST PRINTS - alternative perspectives on sequence similarity.
Bioinformatics 15(6): 523-524 (1999) |
| 9 |  | Terri K. Attwood,
Darren R. Flower,
A. P. Lewis,
J. E. Mabey,
S. R. Morgan,
Philip Scordis,
J. N. Selley,
W. Wright:
PRINTS prepares for the new millennium.
Nucleic Acids Research 27(1): 220-225 (1999) |
| 1998 |
| 8 |  | Terri K. Attwood,
Michael E. Beck,
Darren R. Flower,
Philip Scordis,
J. N. Selley:
The PRINTS protein fingerprint database in its fifth year.
Nucleic Acids Research 26(1): 304-308 (1998) |
| 1997 |
| 7 |  | Terri K. Attwood,
H. Avison,
Michael E. Beck,
Maria C. Bewley,
Alan J. Bleasby,
F. Brewster,
P. Cooper,
Kirill Degtyarenko,
A. J. Geddes,
Darren R. Flower,
M. P. Kelly,
Shaun Lott,
K. M. Measures,
D. J. Parry-Smith,
D. N. Perkins,
Philip Scordis,
David Scott,
C. Worledge:
The PRINTS Database of Protein Fingerprints: A Novel Information Resource for Computational Molecular Biology.
Journal of Chemical Information and Computer Sciences 37(3): 417-424 (1997) |
| 6 |  | Terri K. Attwood,
Michael E. Beck,
Alan J. Bleasby,
Kirill Degtyarenko,
A. D. Michie,
D. J. Parry-Smith:
Novel developments with the PRINTS protein fingerprint database.
Nucleic Acids Research 25(1): 212-217 (1997) |
| 1996 |
| 5 |  | D. N. Perkins,
Terri K. Attwood:
XFINGER: a tool for searching and visualising protein fingerprints and patterns.
Computer Applications in the Biosciences 12(2): 89-94 (1996) |
| 4 |  | Terri K. Attwood,
Michael E. Beck,
Alan J. Bleasby,
Kirill Degtyarenko,
D. J. Parry-Smith:
Progress with the PRINTS protein fingerprint database.
Nucleic Acids Research 24(1): 182-188 (1996) |
| 1992 |
| 3 |  | D. Akrigg,
Terri K. Attwood,
Alan J. Bleasby,
John B. C. Findlay,
A. C. North,
N. A. Maughan,
D. J. Parry-Smith,
D. N. Perkins,
J. C. Wootton:
SERPENT - an information storage and analysis resource for protein sequences.
Computer Applications in the Biosciences 8(3): 295-296 (1992) |
| 2 |  | D. J. Parry-Smith,
Terri K. Attwood:
ADSP - a new package for computational sequence analysis.
Computer Applications in the Biosciences 8(5): 451-459 (1992) |
| 1991 |
| 1 |  | D. J. Parry-Smith,
Terri K. Attwood:
SOMAP: a novel interactive approach to multiple protein sequences alignment.
Computer Applications in the Biosciences 7(2): 233-235 (1991) |