David A. Bader

	2009
88		Rick Quax, David A. Bader, Peter M. A. Sloot: Simulating Individual-Based Models of Epidemics in Hierarchical Networks. ICCS (1) 2009: 725-734
87		Kamesh Madduri, David A. Bader: Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis. IPDPS 2009: 1-11
86		Seunghwa Kang, David A. Bader, Richard W. Vuduc: Understanding the design trade-offs among current multicore systems for numerical computations. IPDPS 2009: 1-12
85		Kamesh Madduri, David Ediger, Karl Jiang, David A. Bader, Daniel G. Chavarría-Miranda: A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets. IPDPS 2009: 1-8
84		Seunghwa Kang, David A. Bader: An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs. PPOPP 2009: 15-24
83		Amrita Mathuriya, David A. Bader, Christine E. Heitsch, Stephen C. Harvey: GTfold: a scalable multicore code for RNA secondary structure prediction. SAC 2009: 981-988
82		Virat Agarwal, David A. Bader, Lin Dan, Lurng-Kuo Liu, Davide Pasetto, Michael Perrone, Fabrizio Petrini: Faster FAST: multicore acceleration of streaming financial data. Computer Science - R&D 23(3-4): 249-257 (2009)
81		David A. Bader, Virat Agarwal, Seunghwa Kang: Computing discrete transforms on the Cell Broadband Engine. Parallel Computing 35(3): 119-137 (2009)
	2008
80		David A. Bader: Petascale Computing for Large-Scale Graph Problems. CISIS 2008: 779
79		David A. Bader, Aparna Chandramowlishwaran, Virat Agarwal: On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis. ICPP 2008: 520-527
78		Seunghwa Kang, David A. Bader: Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine. ICPP 2008: 83-90
77		David A. Bader, Sulabh Patel: High performance MPEG-2 software decoder on the cell broadband engine. IPDPS 2008: 1-10
76		Virat Agarwal, Lurng-Kuo Liu, David A. Bader: Financial modeling on the cell broadband engine. IPDPS 2008: 1-12
75		David A. Bader, Kamesh Madduri: SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks. IPDPS 2008: 1-12
74		David A. Bader, Viktor K. Prasanna: DOSA: design optimizer for scientific applications. IPDPS 2008: 1-5
73		David A. Bader: Engineering Algorithms for Computational Biology. Encyclopedia of Algorithms 2008
72		David A. Bader: High Performance Algorithm Engineering for Large-scale Problems. Encyclopedia of Algorithms 2008
71		David A. Bader: Sorting Signed Permutations by Reversal (Reversal Distance). Encyclopedia of Algorithms 2008
70		David A. Bader, Srinivas Aluru: High-performance computational biology. Parallel Computing 34(11): 613-615 (2008)
69		David A. Bader, Kamesh Madduri: A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms. Parallel Computing 34(11): 627-639 (2008)
	2007
68		Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak: An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. ALENEX 2007
67		David A. Bader, Virat Agarwal: FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine. HiPC 2007: 172-184
66		David A. Bader: Petascale Computing for Large-Scale Graph Problems. IPDPS 2007: 1
65		David A. Bader, Virat Agarwal, Kamesh Madduri: On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking. IPDPS 2007: 1-10
64		David A. Bader, Viktor K. Prasanna: DOSA: Design Optimizer for Scientific Applications. IPDPS 2007: 1-6
63		David A. Bader, Kamesh Madduri: A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms. IPDPS 2007: 1-8
62		Joseph R. Crobak, Jonathan W. Berry, Kamesh Madduri, David A. Bader: Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. IPDPS 2007: 1-8
61		David A. Bader, Varun Kanade, Kamesh Madduri: SWARM: A Parallel Programming Framework for Multicore Processors. IPDPS 2007: 1-8
60		Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. IPDPS 2007: 13
59		Guojing Cong, David A. Bader: Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors. ISPA 2007: 137-147
58		David A. Bader: Petascale Computing for Large-Scale Graph Problems. PPAM 2007: 166-169
57		David A. Bader, Shiva Kintali, Kamesh Madduri, Milena Mihail: Approximating Betweenness Centrality. WAW 2007: 124-137
56		Sagar Dhakal, Majeed M. Hayat, Jorge E. Pezoa, Cundong Yang, David A. Bader: Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach. IEEE Trans. Parallel Distrib. Syst. 18(4): 485-497 (2007)
55		Diana H. P. Low, Bharadwaj Veeravalli, David A. Bader: On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures. J. Parallel Distrib. Comput. 67(9): 1007-1017 (2007)
54		David A. Bader, Virat Agarwal, Kamesh Madduri, Seunghwa Kang: High performance combinatorial algorithm design on the Cell Broadband Engine processor. Parallel Computing 33(10-11): 720-740 (2007)
	2006
53		David A. Bader, Kamesh Madduri: Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2. ICPP 2006: 523-530
52		David A. Bader, Kamesh Madduri: Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks. ICPP 2006: 539-550
51		David A. Bader, Vaddadi P. Chandu, Mi Yan: ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony. ICPP 2006: 65-73
50		Matthew J. Sottile, Vaddadi P. Chandu, David A. Bader: Performance analysis of parallel programs via message-passing graph traversal. IPDPS 2006
49		Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman: M11 - High-performance computing methods for computational genomics. SC 2006: 225
48		David A. Bader, Usman Roshan, Alexandros Stamatakis: Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Advances in Computers 68: 128-179 (2006)
47		Srinivas Aluru, Nancy M. Amato, David A. Bader: Editorial: Special Section on High-Performance Computational Biology. IEEE Trans. Parallel Distrib. Syst. 17(8): 737-739 (2006)
46		David A. Bader, Guojing Cong: Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs. J. Parallel Distrib. Comput. 66(11): 1366-1378 (2006)
45		Guojing Cong, David A. Bader: Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. J. Parallel Distrib. Comput. 66(6): 854-866 (2006)
	2005
44		David A. Bader, Manish Parashar, Sridhar Varadarajan, Viktor K. Prasanna: High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings Springer 2005
43		David A. Bader, Vipin Sachdeva: Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. CSB Workshops 2005: 83-84
42		David A. Bader, Kamesh Madduri: Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors. HiPC 2005: 465-476
41		David A. Bader, Guojing Cong, John Feo: On the Architectural Requirements for Efficient Execution of Graph Algorithms. ICPP 2005: 547-556
40		Guojing Cong, David A. Bader: An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs). IPDPS 2005
39		Guojing Cong, David A. Bader: An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs. ISCA PDCS 2005: 27-34
38		David A. Bader, Vipin Sachdeva: A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. ISCA PDCS 2005: 41-48
37		David A. Bader: High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology. WEA 2005: 16-21
36		David A. Bader, Guojing Cong: A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). J. Parallel Distrib. Comput. 65(9): 994-1006 (2005)
	2004
35		David A. Bader, Ashfaq A. Khokhar: Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, September 15-17, 2004, The Canterbury Hotel, San Francisco, California, USA ISCA 2004
34		Mohammed Javeed Zaki, David A. Bader, Johan Montagnat, Concettina Guerra: Topic 17: High Performance Bioinformatics. Euro-Par 2004: 988
33		David A. Bader, Kamesh Madduri: A Parallel State Assignment Algorithm for Finite State Machines. HiPC 2004: 297-308
32		Guojing Cong, David A. Bader: Lock-Free Parallel Algorithms: An Experimental Study. HiPC 2004: 516-528
31		Mehmet F. Su, Ihab El-Kady, David A. Bader, Shawn-Yu Lin: A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization. ICPP 2004: 373-379
30		Guojing Cong, David A. Bader: The Euler Tour Technique and Parallel Rooted Spanning Tree. ICPP 2004: 448-457
29		David A. Bader, Guojing Cong: A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors. IPDPS 2004
28		David A. Bader, Guojing Cong: Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs. IPDPS 2004
27		David A. Bader: Computational biology and high-performance computing. Commun. ACM 47(11): 34-41 (2004)
26		David A. Bader, Srinivas Aluru: Special Issue: High Performance Computational Biology. Concurrency - Practice and Experience 16(9): 817-821 (2004)
25		Marc Snir, David A. Bader: A Framework for Measuring Supercomputer Productivity. IJHPCA 18(4): 417-432 (2004)
24		David A. Bader: An improved, randomized algorithm for parallel selection with an experimental study. J. Parallel Distrib. Comput. 64(9): 1051-1059 (2004)
	2003
23		Srinivas Aluru, David A. Bader: Guest Editor's Introduction: Special issue on high-performance computational biology. J. Parallel Distrib. Comput. 63(7-8): 671-673 (2003)
	2002
22		David A. Bader, Sukanya Sreshta, Nina R. Weisse-Bernstein: Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract). HiPC 2002: 63-78
21		David A. Bader, Srinivas Aluru: Workshop Introduction. IPDPS 2002
20		Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. The Journal of Supercomputing 22(1): 99-111 (2002)
	2001
19		David A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein: Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. Algorithm Engineering 2001: 129-144
18		Bernard M. E. Moret, David A. Bader, Tandy Warnow: High-Performance Algorithm Engineering for Computational Phylogenetics. International Conference on Computational Science (2) 2001: 1012-1021
17		Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan: A New Implmentation and Detailed Study of Breakpoint Analysis. Pacific Symposium on Biocomputing 2001: 583-594
16		David A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. WADS 2001: 365-376
15		David A. Bader, Rob Pennington: Applications. IJHPCA 15(2): 181-185 (2001)
14		David A. Bader, Bernard M. E. Moret, Mi Yan: A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. Journal of Computational Biology 8(5): 483-491 (2001)
	2000
13		Rob Pennington, David A. Bader, Barney Maccabe, Patricia A. Kovatch, Stephen L. Scott: Tutorial A: Design and Analysis of High Performance Clusters. CLUSTER 2000: 1-2
12		David A. Bader, Bernard M. E. Moret, Peter Sanders: Algorithm Engineering for Parallel Computation. Experimental Algorithmics 2000: 1-23
	1999
11		David A. Bader, Arthur B. Maccabe, Jason R. Mastaler, John K. McIver III, Patricia A. Kovatch: Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster. IWCC 1999: 9-18
10		David A. Bader, Joseph JáJá: SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). J. Parallel Distrib. Comput. 58(1): 92-108 (1999)
	1998
9		David R. Helman, Joseph JáJá, David A. Bader: A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation. ACM Journal of Experimental Algorithmics 3: 4 (1998)
8		David R. Helman, David A. Bader, Joseph JáJá: A Randomized Parallel Sorting Algorithm with an Experimental Study. J. Parallel Distrib. Comput. 52(1): 1-23 (1998)
	1996
7		David A. Bader, Joseph JáJá: Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection. IPPS 1996: 292-301
6		David A. Bader, Joseph JáJá, David Harwood, Larry S. Davis: Parallel Algorithms for Image Enhancement and Segmentation by Region Growing with an Experimental Study. IPPS 1996: 414-423
5		David R. Helman, David A. Bader, Joseph JáJá: Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract). SPAA 1996: 211-222
4		David A. Bader, David R. Helman, Joseph JáJá: Practical Parallel Algorithms for Personalized Communication and Integer Sorting. ACM Journal of Experimental Algorithmics 1: 3 (1996)
3		David A. Bader, Joseph JáJá: Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. J. Parallel Distrib. Comput. 35(2): 173-190 (1996)
	1995
2		David A. Bader, Joseph JáJá: Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study (Extended Abstract). PPOPP 1995: 123-133
1		David A. Bader, Joseph JáJá, Rama Chellappa: Scalable data parallel algorithms for texture synthesis using Gibbs random fields. IEEE Transactions on Image Processing 4(10): 1456-1460 (1995)

Coauthor Index

1	Virat Agarwal	[54] [65] [67] [76] [79] [81] [82]
2	Srinivas Aluru	[21] [23] [26] [47] [49] [60] [70]
3	Nancy M. Amato	[47]
4	Jonathan W. Berry	[62] [68]
5	Aparna Chandramowlishwaran	[79]
6	Vaddadi P. Chandu	[50] [51]
7	Daniel G. Chavarría-Miranda	[85]
8	Rama Chellappa	[1]
9	Guojing Cong	[28] [29] [30] [32] [36] [39] [40] [41] [45] [46] [59]
10	Joseph R. Crobak	[62] [68]
11	Lin Dan	[82]
12	Larry S. Davis	[6]
13	Sagar Dhakal	[56]
14	David Ediger	[85]
15	Ihab El-Kady	[31]
16	John Feo	[41]
17	Concettina Guerra	[34]
18	Stephen C. Harvey	[83]
19	David Harwood	[6]
20	Majeed M. Hayat	[56]
21	Christine E. Heitsch	[83]
22	David R. Helman	[4] [5] [8] [9]
23	Ajith K. Illendula	[19]
24	Joseph JáJá	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10]
25	Karl Jiang	[85]
26	Anantharaman Kalyanaraman (Ananth Kalyanaraman)	[49] [60]
27	Varun Kanade	[61]
28	Seunghwa Kang	[54] [78] [81] [84] [86]
29	Ashfaq A. Khokhar	[35]
30	Shiva Kintali (Shiva Prasad Kintali)	[57]
31	Patricia A. Kovatch	[11] [13]
32	Shawn-Yu Lin	[31]
33	Lurng-Kuo Liu	[76] [82]
34	Diana H. P. Low	[55]
35	Arthur B. Maccabe	[11]
36	Barney Maccabe	[13]
37	Kamesh Madduri	[33] [42] [52] [53] [54] [57] [61] [62] [63] [65] [68] [69] [75] [85] [87]
38	Jason R. Mastaler	[11]
39	Amrita Mathuriya	[83]
40	John K. McIver III	[11]
41	Milena Mihail	[57]
42	Johan Montagnat	[34]
43	Bernard M. E. Moret	[12] [14] [16] [17] [18] [19] [20]
44	Manish Parashar	[44]
45	Davide Pasetto	[82]
46	Sulabh Patel	[77]
47	Rob Pennington	[13] [15]
48	Michael Perrone	[82]
49	Fabrizio Petrini	[82]
50	Jorge E. Pezoa	[56]
51	Viktor K. Prasanna (V. K. Prasanna Kumar)	[44] [64] [74]
52	Rick Quax	[88]
53	Usman Roshan	[48]
54	Vipin Sachdeva	[38] [43]
55	Peter Sanders	[12]
56	Stephen L. Scott	[13]
57	Peter M. A. Sloot	[88]
58	Marc Snir	[25]
59	Matthew J. Sottile	[50]
60	Sukanya Sreshta	[22]
61	Alexandros Stamatakis	[48]
62	Mehmet F. Su	[31]
63	Sridhar Varadarajan	[44]
64	Bharadwaj Veeravalli	[55]
65	Richard W. Vuduc (Rich Vuduc)	[86]
66	Tandy Warnow	[17] [18] [20]
67	Nina R. Weisse-Bernstein	[19] [22]
68	Stacia K. Wyman	[17]
69	Mi Yan	[14] [16] [17] [51]
70	Cundong Yang	[56]
71	Mohammed Javeed Zaki (Mohammed J. Zaki)	[34]

Colors in the list of coauthors