Vineet Bafna

	2012
63		Marcus Kinsella, Vineet Bafna: Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics. RECOMB 2012: 148-162
62		Lucila Ohno-Machado, Vineet Bafna, Aziz A. Boxwala, Brian E. Chapman, Wendy Webber Chapman, Kamalika Chaudhuri, Michele E. Day, Claudiu Farcas, Nathaniel D. Heintzman, Xiaoqian Jiang, Hyeoneui Kim, Jihoon Kim, Michael E. Matheny, Frederic S. Resnic, Staal A. Vinterbo: iDASH: integrating data for analysis, anonymization, and sharing. JAMIA 19(2): 196-201 (2012)
	2011
61		Vineet Bafna, Süleyman Cenk Sahinalp: Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings Springer 2011
60		Marcus Kinsella, Olivier Harismendy, Masakazu Nakano, Kelly A. Frazer, Vineet Bafna: Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Bioinformatics 27(8): 1068-1075 (2011)
59		Banu Dost, Chunlei Wu, Andrew Su, Vineet Bafna: TCLUST: A Fast Method for Clustering Genome-Scale Expression Data. IEEE/ACM Trans. Comput. Biology Bioinform. 8(3): 808-818 (2011)
58		Michael Elberfeld, Vineet Bafna, Iftah Gamzu, Alexander Medvedovsky, Danny Segev, Dana Silverbush, Uri Zwick, Roded Sharan: On the Approximability of Reachability-Preserving Network Orientations. Internet Mathematics 7(4): 209-232 (2011)
	2010
57		Christos Kozanitis, Chris Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese: Compressing Genomic Sequence Fragments Using SlimGene. RECOMB 2010: 310-324
56		Dumitru Brinza, Matthew Schultz, Glenn Tesler, Vineet Bafna: RAPID detection of gene-gene interactions in genome-wide association studies. Bioinformatics 26(22): 2856-2862 (2010)
55		Gaurav Bhatia, Vikas Bansal, Olivier Harismendy, Nicholas J. Schork, Eric J. Topol, Kelly A. Frazer, Vineet Bafna: A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes. PLoS Computational Biology 6(10): (2010)
	2009
54		Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna: Optimizing PCR Assays for DNA Based Cancer Diagnostics. RECOMB 2009: 220-235
53		Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna: Shared Peptides in Mass Spectrometry Based Protein Quantification. RECOMB 2009: 356-371
	2008
52		Vikas Bansal, Vineet Bafna: HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. ECCB 2008: 153-159
51		Maxim Kalaev, Vineet Bafna, Roded Sharan: Fast and Accurate Alignment of Multiple Protein Networks. RECOMB 2008: 246-256
50		Alexander Medvedovsky, Vineet Bafna, Uri Zwick, Roded Sharan: An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks. WABI 2008: 222-232
49		Buhm Han, Banu Dost, Vineet Bafna, Shaojie Zhang: Structural Alignment of Pseudoknotted RNA. Journal of Computational Biology 15(5): 489-504 (2008)
48		Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan: QNet: A Tool for Querying Protein Interaction Networks. Journal of Computational Biology 15(7): 913-925 (2008)
47		Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J. Raphael: Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer. PLoS Computational Biology 4(4): (2008)
	2007
46		Trey Ideker, Vineet Bafna: Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers Springer 2007
45		Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan: QNet: A Tool for Querying Protein Interaction Networks. RECOMB 2007: 1-15
44		Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, Dennis Carson, Vineet Bafna: Optimization of primer design for the detection of variable genomic lesions in cancer. Bioinformatics 23(21): 2807-2815 (2007)
43		Dan Gusfield, Vikas Bansal, Vineet Bafna, Yun S. Song: A Decomposition Theory for Phylogenetic Networks and Incompatible Characters. Journal of Computational Biology 14(10): 1247-1272 (2007)
	2006
42		Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna: A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. ISMB (Supplement of Bioinformatics) 2006: 557-565
41		Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna: Structural Alignment of Pseudoknotted RNA. RECOMB 2006: 143-158
40		Vineet Bafna, Haixu Tang, Shaojie Zhang: Consensus Folding of Unaligned RNA Sequences Revisited. Journal of Computational Biology 13(2): 283-295 (2006)
39		Vineet Bafna, Vikas Bansal: Inference about Recombination from Haplotype Data: Lower Bounds and Recombination Hotspots. Journal of Computational Biology 13(2): 501-521 (2006)
	2005
38		Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner: Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. CSB 2005: 157-166
37		Vineet Bafna, Haixu Tang, Shaojie Zhang: Consensus Folding of Unaligned RNA Sequences Revisited. RECOMB 2005: 172-187
36		Vineet Bafna, Vikas Bansal: Improved Recombination Lower Bounds for Haplotype Data. RECOMB 2005: 569-584
35		Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna: Searching Genomes for Noncoding RNA Using FastR. IEEE/ACM Trans. Comput. Biology Bioinform. 2(4): 366-379 (2005)
34		Vineet Bafna, Sorin Istrail, Giuseppe Lancia, Romeo Rizzi: Polynomial and APX-hard cases of the individual haplotyping problem. Theor. Comput. Sci. 335(1): 109-125 (2005)
	2004
33		Vineet Bafna, Shaojie Zhang: FastR: Fast Database Search Tool for Non-Coding RNA. CSB 2004: 52-61
32		Vineet Bafna, Vikas Bansal: The Number of Recombination Events in a Sample History: Conflict Graph and Lower Bounds. IEEE/ACM Trans. Comput. Biology Bioinform. 1(2): 78-90 (2004)
31		Vineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph: A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Journal of Computational Biology 11(5): 858-866 (2004)
	2003
30		Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail: Combinatorial Problems Arising in SNP and Haplotype Analysis. DMTCS 2003: 26-47
29		Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail: Haplotypes and informative SNP selection algorithms: don't block out information. RECOMB 2003: 19-27
28		Vineet Bafna, Nathan Edwards: On de novo interpretation of tandem mass spectra for peptide identification. RECOMB 2003: 9-18
27		Russell Schwartz, Bjarni V. Halldórsson, Vineet Bafna, Andrew G. Clark, Sorin Istrail: Robustness of Inference of Haplotype Block Structure. Journal of Computational Biology 10(1): 13-20 (2003)
26		Vineet Bafna, Dan Gusfield, Giuseppe Lancia, Shibu Yooseph: Haplotyping as Perfect Phylogeny: A Direct Approach. Journal of Computational Biology 10(3/4): 323-340 (2003)
	2002
25		Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail: A Survey of Computational Methods for Determining Haplotypes. Computational Methods for SNPs and Haplotype Inference 2002: 26-47
24		Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia: Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem. WABI 2002: 29-43
	2001
23		Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross Lippert, Russell Schwartz: SNPs Problems, Complexity, and Algorithms. ESA 2001: 182-193
22		Vineet Bafna, Nathan Edwards: SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. ISMB (Supplement of Bioinformatics) 2001: 13-21
	2000
21		Vineet Bafna, Daniel H. Huson: The Conserved Exon Method for Gene Finding. ISMB 2000: 3-12
20		Vineet Bafna, Sridhar Hannenhalli, Ken Rice, Lisa Vawter: Ligand-Receptor Pairing Via Tree Comparison. Journal of Computational Biology 7(1-2): 59-70 (2000)
	1999
19		Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup: On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SIAM J. Comput. 28(3): 1073-1085 (1999)
18		Bang Ye Wu, Giuseppe Lancia, Vineet Bafna, Kun-Mao Chao, R. Ravi, Chuan Yi Tang: A Polynomial-Time Approximation Scheme for Minimum Routing Cost Spanning Trees. SIAM J. Comput. 29(3): 761-778 (1999)
17		Vineet Bafna, Piotr Berman, Toshihiro Fujito: A 2-Approximation Algorithm for the Undirected Feedback Vertex Set Problem. SIAM J. Discrete Math. 12(3): 289-297 (1999)
	1998
16		Pankaj Agarwal, Vineet Bafna: The Ribosome Scanning Model for Translation Initiation: Implications for Gene Prediction and Full-Length cDNA Detection. ISMB 1998: 2-7
15		Pankaj Agarwal, Vineet Bafna: Detecting non-adjoining correlations with signals in DNA. RECOMB 1998: 2-8
14		Bang Ye Wu, Giuseppe Lancia, Vineet Bafna, Kun-Mao Chao, R. Ravi, Chuan Yi Tang: A Polynomial Time Approximation Scheme for Minimum Routing Cost Spanning Trees. SODA 1998: 21-32
13		Vineet Bafna, Pavel A. Pevzner: Sorting by Transpositions. SIAM J. Discrete Math. 11(2): 224-240 (1998)
	1997
12		Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner: Approximation Algorithms for Multiple Sequence Alignment. Theor. Comput. Sci. 182(1-2): 233-244 (1997)
	1996
11		Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup: On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SODA 1996: 365-372
10		Vineet Bafna, Babu O. Narayanan, R. Ravi: Nonoverlapping Local Alignments (weighted Independent Sets of Axis-parallel Rectangles). Discrete Applied Mathematics 71(1-3): 41-53 (1996)
9		Vineet Bafna, Pavel A. Pevzner: Genome Rearrangements and Sorting by Reversals. SIAM J. Comput. 25(2): 272-289 (1996)
	1995
8		Vineet Bafna, S. Muthukrishnan, R. Ravi: Computing Similarity between RNA Strings. CPM 1995: 1-16
7		Vineet Bafna, Piotr Berman, Toshihiro Fujito: Constant Ratio Approximations of the Weighted Feedback Vertex Set Problem for Undirected Graphs. ISAAC 1995: 142-151
6		Vineet Bafna, Pavel A. Pevzner: Sorting Permutations by Transpositions. SODA 1995: 614-623
5		Vineet Bafna, Babu O. Narayanan, R. Ravi: Non-Overlapping Local Alignments (Weighted Independent Sets of Axis Parallel Rectangles). WADS 1995: 506-517
	1994
4		Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner: Approximation Algorithms for Multiple Sequence Alignment. CPM 1994: 43-53
3		Vineet Bafna, Bala Kalyanasundaram, Kirk Pruhs: Not All Insertion Methods Yield Constant Approximate Tours in the Euclidean Plane. Theor. Comput. Sci. 125(2): 345-360 (1994)
	1993
2		Vineet Bafna, Pavel A. Pevzner: Genome Rearrangements and Sorting by Reversals FOCS 1993: 148-157
	1990
1		Amit Gupta, Anindo Banerjea, Vikas Jha, Vineet Bafna, P. C. P. Bhatt: Parallel Implementation of Logic Languages. CONPAR 1990: 154-165

Coauthor Index

1	Pankaj Agarwal	[15] [16]
2	Richa Agarwala	[11] [19]
3	Yair Aharonowitz	[42]
4	Nuno Bandeira	[53]
5	Anindo Banerjea	[1]
6	Vikas Bansal	[32] [36] [39] [43] [52] [55]
7	Ali Bashir	[44] [47] [54]
8	Piotr Berman	[7] [17]
9	Gaurav Bhatia	[55]
10	P. C. P. Bhatt	[1]
11	Ilya Borovok	[42]
12	Aziz A. Boxwala	[62]
13	Steve Briggs	[53]
14	Dumitru Brinza	[56]
15	Dennis Carson	[44] [54]
16	Kun-Mao Chao	[14] [18]
17	Brian E. Chapman	[62]
18	Wendy Webber Chapman	[62]
19	Kamalika Chaudhuri	[62]
20	Andrew G. Clark	[27] [29]
21	Colin Collins	[47]
22	Michele E. Day	[62]
23	Banu Dost	[41] [45] [48] [49] [53] [59]
24	Nathan Edwards	[22] [25] [28] [30]
25	Michael Elberfeld	[58]
26	Eleazar Eskin	[35]
27	Martin Farach-Colton (Martin Farach)	[11] [19]
28	Claudiu Farcas	[62]
29	Kelly A. Frazer	[55] [60]
30	Toshihiro Fujito	[7] [17]
31	Iftah Gamzu	[58]
32	Amit Gupta	[1]
33	Nitin Gupta	[45] [48]
34	Dan Gusfield	[26] [31] [43]
35	Brian Haas	[35]
36	Bjarni V. Halldórsson	[25] [27] [29] [30]
37	Buhm Han	[41] [49]
38	Sridhar Hannenhalli	[20] [31]
39	Olivier Harismendy	[55] [60]
40	Nathaniel D. Heintzman	[62]
41	Daniel H. Huson	[21]
42	Trey Ideker	[46]
43	Sorin Istrail	[23] [24] [25] [27] [29] [30] [34]
44	Vikas Jha	[1]
45	Xiaoqian Jiang	[62]
46	Maxim Kalaev	[51]
47	Bala Kalyanasundaram	[3]
48	Hyeoneui Kim	[62]
49	Jihoon Kim	[62]
50	Marcus Kinsella	[60] [63]
51	Christos Kozanitis	[57]
52	Semyon Kruglyak	[57]
53	Giuseppe Lancia	[14] [18] [23] [24] [26] [34]
54	Eugene L. Lawler	[4] [12]
55	Xiangqian Li	[53]
56	Ross Lippert (Ross A. Lippert)	[23] [25] [30]
57	Yu-Tsueng Liu	[44] [54]
58	Qing Lu	[54]
59	Michael E. Matheny	[62]
60	Alexander Medvedovsky	[50] [58]
61	S. Muthukrishnan (S. Muthu Muthukrishnan)	[8]
62	Masakazu Nakano	[60]
63	Babu O. Narayanan	[5] [10] [11]
64	Lucila Ohno-Machado	[62]
65	Mike Paterson	[11] [19]
66	Pavel A. Pevzner	[2] [4] [6] [9] [12] [13] [38]
67	Kirk Pruhs	[3]
68	Benjamin J. Raphael	[44] [47] [54]
69	R. Ravi	[5] [8] [10] [14] [18]
70	Frederic S. Resnic	[62]
71	Ken Rice	[20]
72	Romeo Rizzi	[24] [34]
73	Eytan Ruppin	[45] [48]
74	Süleyman Cenk Sahinalp	[61]
75	Chris Saunders	[57]
76	Nicholas J. Schork	[55]
77	Matthew Schultz	[56]
78	Russell Schwartz	[23] [27] [29]
79	Danny Segev	[58]
80	Roded Sharan	[42] [45] [48] [50] [51] [58]
81	Zhouxin Shen	[53]
82	Tomer Shlomi	[45] [48]
83	Dana Silverbush	[58]
84	Yun S. Song	[43]
85	Andrew Su	[59]
86	Chuan Yi Tang	[14] [18]
87	Haixu Tang	[37] [40]
88	Stephen Tanner	[38]
89	Glenn Tesler	[56]
90	Mikkel Thorup	[11] [19]
91	Eric J. Topol	[55]
92	Dekel Tsur	[38]
93	George Varghese	[57]
94	Lisa Vawter	[20]
95	Staal A. Vinterbo	[62]
96	Stanislav Volik	[47]
97	Bang Ye Wu	[14] [18]
98	Chunlei Wu	[59]
99	Shibu Yooseph	[25] [26] [30] [31]
100	Ebrahim Zandi	[38]
101	Shaojie Zhang	[33] [35] [37] [40] [41] [42] [49]
102	Uri Zwick	[50] [58]

Colors in the list of coauthors

Last update Thu May 24 01:13:30 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page