Ivet Bahar

	2011
26		Ahmet Bakan, Ivet Bahar: Computational Generation inhibitor-Bound Conformers of P38 Map Kinase and Comparison with Experiments. Pacific Symposium on Biocomputing 2011: 181-192
25		Ahmet Bakan, Lidio M. Meireles, Ivet Bahar: ProDy: Protein Dynamics Inferred from Theory and Experiments. Bioinformatics 27(11): 1575-1577 (2011)
24		Enrique Marcos, Ramon Crehuet, Ivet Bahar: Changes in Dynamics upon Oligomerization Regulate Substrate Binding and Allostery in Amino Acid Kinase Family Members. PLoS Computational Biology 7(9): (2011)
	2010
23		Ying Liu, Ivet Bahar: Toward Understanding Allosteric Signaling Mechanisms in the ATPase Domain of Molecular Chaperones. Pacific Symposium on Biocomputing 2010: 269-280
22		Enrique Marcos, Ramon Crehuet, Ivet Bahar: On the Conservation of the Slow Conformational Dynamics within the Amino Acid Kinase Family: NAGK the Paradigm. PLoS Computational Biology 6(4): (2010)
21		Timothy R. Lezon, Ivet Bahar: Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology. PLoS Computational Biology 6(6): (2010)
20		Ying Liu, Lila M. Gierasch, Ivet Bahar: Role of Hsp70 ATPase Domain Intrinsic Dynamics and Sequence Evolution in Enabling its Functional Interactions with NEFs. PLoS Computational Biology 6(9): (2010)
	2009
19		Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao: Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics. Bioinformatics 25(16): 2147 (2009)
18		Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao: Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics. Bioinformatics 25(5): 606-614 (2009)
17		Zheng Yang, Peter Májek, Ivet Bahar: Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL. PLoS Computational Biology 5(4): (2009)
16		Timothy R. Lezon, Andrej Sali, Ivet Bahar: Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models. PLoS Computational Biology 5(9): (2009)
	2008
15		Ying Liu, Eran Eyal, Ivet Bahar: Analysis of correlated mutations in HIV-1 protease using spectral clustering. Bioinformatics 24(10): 1243-1250 (2008)
	2007
14		Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar: Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models. ISMB/ECCB (Supplement of Bioinformatics) 2007: 175-184
13		Dror Tobi, Ivet Bahar: Recruitment of rare 3-grams at functional sites: Is this a mechanism for increasing enzyme specificity? BMC Bioinformatics 8: (2007)
12		Eran Eyal, Shmuel Pietrokovski, Ivet Bahar: Rapid assessment of correlated amino acids from pair-to-pair (P2P) substitution matrices. Bioinformatics 23(14): 1837-1839 (2007)
11		Chakra Chennubhotla, Ivet Bahar: Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. Journal of Computational Biology 14(6): 765-776 (2007)
10		Chakra Chennubhotla, Ivet Bahar: Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Computational Biology 3(10): (2007)
9		Chakra Chennubhotla, Ivet Bahar: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Computational Biology 3(9): (2007)
	2006
8		Chakra Chennubhotla, Ivet Bahar: Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. RECOMB 2006: 379-393
7		Illés J. Farkas, Chuang Wu, Chakra Chennubhotla, Ivet Bahar, Zoltán N. Oltvai: Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae. BMC Bioinformatics 7: 478 (2006)
6		Eran Eyal, Lee-Wei Yang, Ivet Bahar: Anisotropic network model: systematic evaluation and a new web interface. Bioinformatics 22(21): 2619-2627 (2006)
5		Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher Jon Jursa, Shann-Ching Chen, Hassan A. Karimi, Ivet Bahar: oGNM: online computation of structural dynamics using the Gaussian Network Model. Nucleic Acids Research 34(Web-Server-Issue): 24-31 (2006)
	2005
4		Lee-Wei Yang, Xiong Liu, Christopher Jon Jursa, Mark Holliman, A. J. Rader, Hassan A. Karimi, Ivet Bahar: iGNM: a database of protein functional motions based on Gaussian Network Model. Bioinformatics 21(13): 2978-2987 (2005)
	2004
3		Xiong Liu, Hassan A. Karimi, Lee-Wei Yang, Ivet Bahar: Protein Functional Motion Query and Visualization. COMPSAC Workshops 2004: 86-89
2		Shann-Ching Chen, Ivet Bahar: Mining frequent patterns in protein structures: a study of protease families. ISMB/ECCB (Supplement of Bioinformatics) 2004: 77-85
	2002
1		Pemra Doruker, Robert L. Jernigan, Ivet Bahar: Dynamics of large proteins through hierarchical levels of coarse-grained structures. Journal of Computational Chemistry 23(1): 119-127 (2002)

Coauthor Index

1	Ahmet Bakan	[25] [26]
2	Shann-Ching Chen	[2] [5]
3	Chakra Chennubhotla	[7] [8] [9] [10] [11] [14]
4	Ramon Crehuet	[22] [24]
5	Pemra Doruker	[1]
6	Eran Eyal	[6] [12] [14] [15] [18] [19]
7	Illés J. Farkas	[7]
8	Lila M. Gierasch	[20]
9	Mark Holliman	[4]
10	Robert L. Jernigan	[1]
11	Christopher Jon Jursa	[4] [5]
12	Hassan A. Karimi	[3] [4] [5]
13	Akio Kitao	[18] [19]
14	Timothy R. Lezon	[16] [21]
15	Xiong Liu	[3] [4] [5]
16	Ying Liu	[15] [20] [23]
17	Peter Májek	[17]
18	Enrique Marcos	[22] [24]
19	Lidio M. Meireles	[25]
20	Zoltán N. Oltvai	[7]
21	Shmuel Pietrokovski	[12]
22	A. J. Rader	[4] [5]
23	Andrej Sali	[16]
24	Dror Tobi	[13]
25	Chuang Wu	[7]
26	Lee-Wei Yang	[3] [4] [5] [6] [14] [18] [19]
27	Zheng Yang	[17]

Colors in the list of coauthors

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