Casey M. Bergman

	2009
9		Hui Yang, John A. Keane, Casey M. Bergman, Goran Nenadic: Assigning roles to protein mentions: The case of transcription factors. Journal of Biomedical Informatics 42(5): 887-894 (2009)
	2008
8		Obi L. Griffith, Stephen Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones: ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Research 36(Database-Issue): 107-113 (2008)
7		Marc S. Halfon, Steven M. Gallo, Casey M. Bergman: REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila. Nucleic Acids Research 36(Database-Issue): 594-598 (2008)
	2007
6		Casey M. Bergman, Hadi Quesneville: Discovering and detecting transposable elements in genome sequences. Briefings in Bioinformatics 8(6): 382-392 (2007)
	2006
5		Nora Pierstorff, Casey M. Bergman, Thomas Wiehe: Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA. Bioinformatics 22(23): 2858-2864 (2006)
4		Stephen Montgomery, Obi L. Griffith, Monica C. Sleumer, Casey M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, X. Zhang, Steven J. M. Jones: ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics 22(5): 637-640 (2006)
	2005
3		Casey M. Bergman, Joseph W. Carlson, Susan E. Celniker: Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics 21(8): 1747-1749 (2005)
	2004
2		Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen: Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics 5: 6 (2004)
1		Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen: Correction: Benchmarking tools for the alignment of functional noncodingDNA. BMC Bioinformatics 5: 73 (2004)

Coauthor Index

1	Stein Aerts	[8]
2	Bridget Bernier	[8]
3	Mikhail Bilenky	[8]
4	Misha Bilenky	[4]
5	Enrique Blanco	[8]
6	Pieter J. De Bleser	[8]
7	Joseph W. Carlson	[3]
8	Susan E. Celniker	[1] [2] [3]
9	Bryan Chu	[8]
10	Ian J. Donaldson	[8]
11	Michael B. Eisen	[1] [2]
12	Steven M. Gallo	[7] [8]
13	Belinda Giardine	[8]
14	Malachi Griffith	[8]
15	Obi L. Griffith	[4] [8]
16	Maximilian Haeussler	[8]
17	Marc S. Halfon	[7] [8]
18	Ross C. Hardison	[8]
19	Bart Hooghe	[8]
20	Steven J. M. Jones	[4] [8]
21	Katayoon Kasaian	[8]
22	John A. Keane	[9]
23	Stuart Lithwick	[8]
24	Peter Van Loo	[8]
25	Shaun Mahony	[8]
26	Stephen Montgomery	[4] [8]
27	Goran Nenadic	[9]
28	Nora Pierstorff	[5]
29	Erin Pleasance	[4]
30	Daniel A. Pollard	[1] [2]
31	Elodie Portales-Casamar	[8]
32	Y. Prychyna	[4]
33	Hadi Quesneville	[6]
34	Gordon Robertson	[8]
35	Monica C. Sleumer	[4] [8]
36	Jens Stoye	[1] [2]
37	Amy Ticoll	[8]
38	Dominique Vlieghe	[8]
39	Claes Wadelius	[8]
40	Wyeth W. Wasserman	[8]
41	Thomas Wiehe	[5]
42	Hui Yang	[9]
43	X. Zhang	[4]

Colors in the list of coauthors