Mathieu Blanchette

	2009
33		Mathieu Lavallée-Adam, Benoit Coulombe, Mathieu Blanchette: Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks. RECOMB 2009: 302-320
	2008
32		Dunarel Badescu, Abdoulaye Baniré Diallo, Mathieu Blanchette, Vladimir Makarenkov: An Evolutionary Study of the Human Papillomavirus Genomes. RECOMB-CG 2008: 128-142
31		Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk: A Phylogenetic Approach to Genetic Map Refinement. RECOMB-CG 2008: 198-210
30		Mathieu Blanchette: Substring Parsimony. Encyclopedia of Algorithms 2008
29		Martin Smith, Mathieu Blanchette, Barbara Papadopoulou: Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania. BMC Bioinformatics 9: (2008)
28		François Fauteux, Mathieu Blanchette, Martina V. Stromvik: Seeder: discriminative seeding DNA motif discovery. Bioinformatics 24(20): 2303-2307 (2008)
	2007
27		Xiaoyu Chen, Mathieu Blanchette: Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees. BMC Bioinformatics 8(S-10): (2007)
26		Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk: Gene Maps Linearization Using Genomic Rearrangement Distances. Journal of Computational Biology 14(4): 394-407 (2007)
25		Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette: Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem. Journal of Computational Biology 14(4): 446-461 (2007)
24		Vincent Ferretti, Christian Poitras, Dominique Bergeron, Benoit Coulombe, François Robert, Mathieu Blanchette: PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Research 35(Database-Issue): 122-126 (2007)
	2006
23		Eric Blais, Mathieu Blanchette: Common Substrings in Random Strings. CPM 2006: 129-140
22		Éric Gaul, Mathieu Blanchette: Ordering Partially Assembled Genomes Using Gene Arrangements. Comparative Genomics 2006: 113-128
21		Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette: Finding Maximum Likelihood Indel Scenarios. Comparative Genomics 2006: 171-185
20		Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk: Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. Comparative Genomics 2006: 99-112
19		Leonid Chindelevitch, Zhentao Li, Eric Blais, Mathieu Blanchette: On the Inference of Parsimonious Indel Evolutionary Scenarios. J. Bioinformatics and Computational Biology 4(3): 721-744 (2006)
18		Fei Fang, Mathieu Blanchette: FootPrinter3: phylogenetic footprinting in partially alignable sequences. Nucleic Acids Research 34(Web-Server-Issue): 617-620 (2006)
	2004
17		Gill Bejerano, David Haussler, Mathieu Blanchette: Into the heart of darkness: large-scale clustering of human non-coding DNA. ISMB/ECCB (Supplement of Bioinformatics) 2004: 40-48
16		Amol Prakash, Mathieu Blanchette, Saurabh Sinha, Martin Tompa: Motif Discovery in Heterogeneous Sequence Data. Pacific Symposium on Biocomputing 2004: 348-359
15		Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cedric Chauve: Reconstructing Ancestral Gene Orders Using Conserved Intervals. WABI 2004: 14-25
14		Saurabh Sinha, Mathieu Blanchette, Martin Tompa: PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences. BMC Bioinformatics 5: 170 (2004)
	2003
13		Mathieu Blanchette, Samson Kwong, Martin Tompa: An Empirical Comparison of Tools for Phylogenetic Footprinting. BIBE 2003: 69-78
12		Mathieu Blanchette: A comparative analysis method for detecting binding sites in coding regions. RECOMB 2003: 57-66
11		Mathieu Blanchette, Martin Tompa: FootPrinter: a program designed for phylogenetic footprinting. Nucleic Acids Research 31(13): 3840-3842 (2003)
	2002
10		Mathieu Blanchette, Benno Schwikowski, Martin Tompa: Algorithms for Phylogenetic Footprinting. Journal of Computational Biology 9(2): 211-223 (2002)
	2001
9		Mathieu Blanchette, Saurabh Sinha: Separating real motifs from their artifacts. ISMB (Supplement of Bioinformatics) 2001: 30-38
8		Mathieu Blanchette: Evolutionary Puzzles: An Introduction to Genome Rearrangement. International Conference on Computational Science (2) 2001: 1003-1011
7		Mathieu Blanchette: Algorithms for phylogenetic footprinting. RECOMB 2001: 49-58
	2000
6		Mathieu Blanchette, Benno Schwikowski, Martin Tompa: An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. ISMB 2000: 37-45
	1999
5		David Sankoff, Mathieu Blanchette: Probability models for genome rearrangement and linear invariants for phylogenetic inference. RECOMB 1999: 302-309
4		David Sankoff, Mathieu Blanchette: Phylogenetic Invariants for Genome Rearrangements. Journal of Computational Biology 6(3/4): (1999)
	1998
3		David Sankoff, Mathieu Blanchette: Multiple genome rearrangements. RECOMB 1998: 243-247
2		David Sankoff, Mathieu Blanchette: Multiple Genome Rearrangement and Breakpoint Phylogeny. Journal of Computational Biology 5(3): 555-570 (1998)
	1997
1		David Sankoff, Mathieu Blanchette: The Median Problem for Breakpoints in Comparative Genomics. COCOON 1997: 251-264

Coauthor Index

1	Dunarel Badescu	[32]
2	Gill Bejerano	[17]
3	Anne Bergeron	[15]
4	Dominique Bergeron	[24]
5	Denis Bertrand	[31]
6	Eric Blais	[19] [20] [23] [26]
7	Guillaume Blin	[20] [26]
8	Annie Chateau	[15]
9	Cedric Chauve	[15]
10	Xiaoyu Chen	[27]
11	Leonid Chindelevitch	[19]
12	Benoit Coulombe	[24] [33]
13	Abdoulaye Baniré Diallo	[21] [25] [32]
14	Nadia El-Mabrouk	[20] [26] [31]
15	Fei Fang	[18]
16	François Fauteux	[28]
17	Vincent Ferretti	[24]
18	Éric Gaul	[22]
19	Pierre Guillon	[20] [26]
20	David Haussler	[17]
21	Danny Hermelin	[26]
22	Samson Kwong	[13]
23	Mathieu Lavallée-Adam	[33]
24	Zhentao Li	[19]
25	Vladimir Makarenkov	[21] [25] [32]
26	Barbara Papadopoulou	[29]
27	Christian Poitras	[24]
28	Amol Prakash	[16]
29	François Robert	[24]
30	David Sankoff	[1] [2] [3] [4] [5]
31	Benno Schwikowski	[6] [10]
32	Saurabh Sinha	[9] [14] [16]
33	Martin Smith	[29]
34	Martina V. Stromvik	[28]
35	Martin Tompa	[6] [10] [11] [13] [14] [16]

Colors in the list of coauthors