Daniel G. Brown

	2009
39		Christina Boucher, Daniel G. Brown: Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding. BICoB 2009: 139-150
38		Daniil Golod, Daniel G. Brown: A Tutorial of Techniques for Improving Standard Hidden Markov Model Algorithms. J. Bioinformatics and Computational Biology 7(4): 737-754 (2009)
	2008
37		Christina Boucher, Daniel G. Brown, Stephane Durocher: On the Structure of Small Motif Recognition Instances. SPIRE 2008: 269-281
	2007
36		Christina Boucher, Daniel G. Brown, Paul Church: A Graph Clustering Approach to Weak Motif Recognition. WABI 2007: 149-160
35		Yichun Xie, Daniel G. Brown: Simulation in spatial analysis and modeling. Computers, Environment and Urban Systems 31(3): 229-231 (2007)
34		Jiunn-Der Duh, Daniel G. Brown: Knowledge-informed Pareto simulated annealing for multi-objective spatial allocation. Computers, Environment and Urban Systems 31(3): 253-281 (2007)
33		Amy C. Burnicki, Daniel G. Brown, Pierre Goovaerts: Simulating error propagation in land-cover change analysis: The implications of temporal dependence. Computers, Environment and Urban Systems 31(3): 282-302 (2007)
32		Kathleen Bergen, Amy M. Gilboy, Daniel G. Brown: Multi-dimensional vegetation structure in modeling avian habitat. Ecological Informatics 2(1): 9-22 (2007)
31		Brona Brejová, Daniel G. Brown, Tomás Vinar: The most probable annotation problem in HMMs and its application to bioinformatics. J. Comput. Syst. Sci. 73(7): 1060-1077 (2007)
	2006
30		Brona Brejová, Daniel G. Brown, Ian M. Harrower, Tomás Vinar: New Bounds for Motif Finding in Strong Instances. CPM 2006: 94-105
29		Daniel G. Brown, Ian M. Harrower: Integer Programming Approaches to Haplotype Inference by Pure Parsimony. IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 141-154 (2006)
28		Daniel G. Brown, Yichun Xie: Spatial agent-based modelling. International Journal of Geographical Information Science 20(9): 941-943 (2006)
27		Emily W. Xu, Paul Kearney, Daniel G. Brown: The Use of Functional Domains to Improve Transmembrane Protein Topology Prediction. J. Bioinformatics and Computational Biology 4(1): 109-124 (2006)
26		Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma: Optimizing Multiple Spaced Seeds for Homology Search. Journal of Computational Biology 13(7): 1355-1368 (2006)
	2005
25		Emily W. Xu, Daniel G. Brown, Paul Kearney: The use of functional domains to improve transmembrane protein topology prediction. APBC 2005: 105-116
24		Brona Brejová, Daniel G. Brown, Ian M. Harrower, Alejandro López-Ortiz, Tomás Vinar: Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern. CPM 2005: 1-10
23		Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar: ExonHunter: a comprehensive approach to gene finding. ISMB (Supplement of Bioinformatics) 2005: 57-65
22		Alexander K. Hudek, Daniel G. Brown: Ancestral sequence alignment under optimal conditions. BMC Bioinformatics 6: 273 (2005)
21		Daniel G. Brown: Optimizing Multiple Seeds for Protein Homology Search. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 29-38 (2005)
20		Daniel G. Brown, Scott E. Page, Rick L. Riolo, Moira Zellner, William Rand: Path dependence and the validation of agent-based spatial models of land use. International Journal of Geographical Information Science 19(2): 153-174 (2005)
19		Brona Brejová, Daniel G. Brown, Tomás Vinar: Vector seeds: An extension to spaced seeds. J. Comput. Syst. Sci. 70(3): 364-380 (2005)
18		Daniel G. Brown, Rick L. Riolo, Derek T. Robinson, Michael North, William Rand: Spatial process and data models: Toward integration of agent-based models and GIS. Journal of Geographical Systems 7(1): 25-47 (2005)
	2004
17		Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma: Optimizing Multiple Spaced Seeds for Homology Search. CPM 2004: 47-58
16		Daniel G. Brown: Multiple Vector Seeds for Protein Alignment. WABI 2004: 170-181
15		Daniel G. Brown, Ian M. Harrower: A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis. WABI 2004: 254-265
14		Daniel G. Brown, Alexander K. Hudek: New Algorithms for Multiple DNA Sequence Alignment. WABI 2004: 314-325
13		Brona Brejová, Daniel G. Brown, Tomás Vinar: The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. WABI 2004: 426-437
12		Daniel G. Brown, Scott E. Page, Rick L. Riolo, William Rand: Agent-based and analytical modeling to evaluate the effectiveness of greenbelts. Environmental Modelling and Software 19(12): 1097-1109 (2004)
11		Daniel G. Brown, Jiunn-Der Duh: Spatial simulation for translating from land use to land cover. International Journal of Geographical Information Science 18(1): 35-60 (2004)
10		Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal Spaced Seeds for Homologous Coding Regions. J. Bioinformatics and Computational Biology 1(4): 595-610 (2004)
9		Daniel G. Brown, Ming Li, Bin Ma: A Tutorial of Recent Developments in the Seeding of Local Alignment. J. Bioinformatics and Computational Biology 2(4): 819-842 (2004)
	2003
8		Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions. CPM 2003: 42-54
7		Brona Brejová, Daniel G. Brown, Tomás Vinar: Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity. WABI 2003: 39-54
6		Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency. WABI 2003: 78-94
	2002
5		Kathleen Bergen, Daniel G. Brown, Eric J. Gustafson, M. Craig Dobson: Integrating Radar Remote Sensing of Habitat Structure: A Pilot Project for Biodiversity Informatics. DG.O 2002
4		Kathleen Bergen, Daniel G. Brown, Eric J. Gustafson, M. Craig Dobson: Radar Remote Sensing of Habitat Structure for Biodiversity Informatics. DG.O 2002
	2001
3		Daniel G. Brown: A probabilistic analysis of a greedy algorithm arising from computational biology. SODA 2001: 206-207
	2000
2		Daniel G. Brown, Todd J. Vision, Steven D. Tanksley: Selective mapping: a discrete optimization approach to selecting a population subset for use in a high-density genetic mapping project. SODA 2000: 419-428
	1998
1		Daniel G. Brown: Classification and Boundary Vagueness in Mapping Presettlement Forest Types. International Journal of Geographical Information Science 12(2): 105-129 (1998)

Coauthor Index

1	Kathleen Bergen	[4] [5] [32]
2	Christina Boucher	[36] [37] [39]
3	Brona Brejová	[6] [7] [8] [10] [13] [19] [23] [24] [30] [31]
4	Amy C. Burnicki	[33]
5	Paul Church	[36]
6	M. Craig Dobson	[4] [5]
7	Jiunn-Der Duh	[11] [34]
8	Stephane Durocher	[37]
9	Amy M. Gilboy	[32]
10	Daniil Golod	[38]
11	Pierre Goovaerts	[33]
12	Eric J. Gustafson	[4] [5]
13	Ian M. Harrower	[15] [24] [29] [30]
14	Alexander K. Hudek	[14] [22]
15	Paul Kearney	[25] [27]
16	Ming Li	[9] [17] [23] [26]
17	Alejandro López-Ortiz	[24]
18	Bin Ma	[9] [17] [26]
19	Michael North	[18]
20	Scott E. Page	[12] [20]
21	William Rand	[12] [18] [20]
22	Rick L. Riolo	[12] [18] [20]
23	Derek T. Robinson	[18]
24	Steven D. Tanksley	[2]
25	Tomás Vinar	[6] [7] [8] [10] [13] [19] [23] [24] [30] [31]
26	Todd J. Vision	[2]
27	Yichun Xie	[28] [35]
28	Emily W. Xu	[25] [27]
29	Jinbo Xu	[17] [26]
30	Moira Zellner	[20]

Colors in the list of coauthors