Atul J. Butte

	2009
21		Nigam H. Shah, Clement Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen: Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinformatics 10(S-2): (2009)
20		Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya: Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinformatics 10(S-2): (2009)
19		Yueyi I. Liu, Paul H. Wise, Atul J. Butte: The "etiome": identification and clustering of human disease etiological factors. BMC Bioinformatics 10(S-2): (2009)
18		Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou: A Classifier-based approach to identify genetic similarities between diseases. Bioinformatics 25(12): (2009)
17		Sangeeta B. English, Shou-Ching Shih, Marco Ramoni, Lois E. Smith, Atul J. Butte: Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR. Journal of Biomedical Informatics 42(2): 287-295 (2009)
	2008
16		Joel Dudley, David P. Chen, Atul J. Butte: Using SNOMED CT For Translational Genomics Data Integration. KR-MED 2008
15		Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann: Session Introduction. Pacific Symposium on Biocomputing 2008: 228-230
14		David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte: Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation. Pacific Symposium on Biocomputing 2008: 243-254
13		Joel Dudley, Atul J. Butte: Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining. Pacific Symposium on Biocomputing 2008: 580-591
12		Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte: GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed. BMC Bioinformatics 9: (2008)
	2007
11		Sangeeta B. English, Atul J. Butte: Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes. Bioinformatics 23(21): 2910-2917 (2007)
	2005
10		Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte: Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinformatics 6: 227 (2005)
	2004
9		Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte: Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinformatics 5: 18 (2004)
	2003
8		Ashish Nimgaonkar, Despina Sanoudou, Atul J. Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs, Isaac S. Kohane: Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinformatics 4: 27 (2003)
7		Kyungjoon Lee, Isaac S. Kohane, Atul J. Butte: PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. Bioinformatics 19(6): 778-779 (2003)
	2002
6		Peter J. Park, Atul J. Butte, Isaac S. Kohane: Comparing expression profiles of genes with similar promoter regions. Bioinformatics 18(12): 1576-1584 (2002)
5		Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane: Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 18(3): 405-412 (2002)
	2001
4		Atul J. Butte, J. Ye, G. Niederfellner, K. Rett, H. U. Häring, M. F. White, Isaac S. Kohane: Determining Significant Fold Differences in Gene Expression Analysis. Pacific Symposium on Biocomputing 2001: 6-17
3		Ben Y. Reis, Atul J. Butte, Isaac S. Kohane: Extracting Knowledge from Dynamics in Gene Expression. Journal of Biomedical Informatics 34(1): 15-27 (2001)
2		Ben Y. Reis, Atul J. Butte, Isaac S. Kohane: Reply. Journal of Biomedical Informatics 34(4): 299-300 (2001)
1		Atul J. Butte, Ling Bao, Ben Y. Reis, Timothy W. Watkins, Isaac S. Kohane: Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics. Journal of Biomedical Informatics 34(6): 396-405 (2001)

Coauthor Index

1	Dominic J. Allocco	[9]
2	Ling Bao	[1]
3	Serafim Batzoglou	[18]
4	Alan H. Beggs	[8]
5	David P. Chen	[14] [16]
6	Rong Chen	[12] [21]
7	Annie P. Chiang	[21]
8	Philip S. Constantinou	[14]
9	Chuong B. Do	[18]
10	Joel Dudley	[13] [16]
11	Sangeeta B. English	[11] [17]
12	Todd A. Ferris	[14]
13	H. U. Häring	[4]
14	Judith N. Haslett	[8]
15	Tor-Kristian Jenssen	[5]
16	Clement Jonquet	[21]
17	Maricel G. Kann	[15]
18	Irene M. Kaplow	[18]
19	Isaac S. Kohane	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10]
20	Louis M. Kunkel	[8]
21	Winston Patrick Kuo	[5]
22	Kyungjoon Lee	[7]
23	Younghee Lee	[15]
24	Yueyi I. Liu	[19]
25	Henry J. Lowe	[14]
26	Yves A. Lussier	[15] [20]
27	Rohan Mallelwar	[12]
28	Mark A. Musen	[21]
29	G. Niederfellner	[4]
30	Ashish Nimgaonkar	[8]
31	Yanay Ofran	[15]
32	Lucila Ohno-Machado	[5]
33	Peter J. Park	[6]
34	Marco Punta	[15]
35	Predrag Radivojac	[15]
36	Marco Ramoni	[17] [20]
37	Ben Y. Reis	[1] [2] [3]
38	K. Rett	[4]
39	Despina Sanoudou	[8]
40	Indra Neil Sarkar	[20]
41	Marc A. Schaub	[18]
42	Nigam H. Shah (Nigam Shah, N. H. Shah)	[21]
43	Shou-Ching Shih	[17]
44	Marina Sirota	[18]
45	Lois E. Smith	[17]
46	Ajit Thosar	[12]
47	Olga G. Troyanskaya	[20]
48	Shivkumar Venkatasubrahmanyam	[12]
49	Timothy W. Watkins	[1]
50	Susan C. Weber	[14]
51	M. F. White	[4]
52	Paul H. Wise	[19]
53	Cecily J. Wolfe	[10]
54	J. Ye	[4]

Colors in the list of coauthors