Rita Casadio

	2009
54		Lisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio: Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. CMSB 2009: 1-17
53		Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI 2009: 62-72
52		Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A graph theoretic approach to protein structure selection. Artificial Intelligence in Medicine 45(2-3): 229-237 (2009)
51		Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress: Progress and challenges in predicting protein-protein interaction sites. Briefings in Bioinformatics 10(3): 233-246 (2009)
	2008
50		Pietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio: A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB 2008: 210-221
49		Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: Predicting protein thermostability changes from sequence upon multiple mutations. ISMB 2008: 190-195
48		Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio: A three-state prediction of single point mutations on protein stability changes. BMC Bioinformatics 9(S-2): (2008)
47		Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio: PredGPI: a GPI-anchor predictor. BMC Bioinformatics 9: (2008)
46		Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinformatics 24(10): 1313-1315 (2008)
45		Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures From Protein Contact Maps. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 357-367 (2008)
	2007
44		Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302
43		Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures from Protein Contact Maps. ISBRA 2007: 578-589
42		Maria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio: High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. ISPA Workshops 2007: 414-423
41		Luciana Carota, Lisa Bartoli, Piero Fariselli, Pier Luigi Martelli, Ludovica Montanucci, Giorgio Maggi, Rita Casadio: High Throughput Comparison of Prokaryotic Genomes. PPAM 2007: 1200-1209
40		Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI 2007: 25-37
39		Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A Graph Theoretic Approach to Protein Structure Selection. WILF 2007: 497-504
38		Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G. Mita, Rita Casadio: A computational approach for detecting peptidases and their specific inhibitors at the genome level. BMC Bioinformatics 8(S-1): (2007)
37		Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole: Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinformatics 8(S-1): (2007)
36		Emidio Capriotti, Rita Casadio: K-Fold: a tool for the prediction of the protein folding kinetic order and rate. Bioinformatics 23(3): 385-386 (2007)
35		Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio: The WWWH of remote homolog detection: The state of the art. Briefings in Bioinformatics 8(2): 78-87 (2007)
34		Rita Casadio: Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) - Part 2. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 3 (2007)
33		Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: eSLDB: eukaryotic subcellular localization database. Nucleic Acids Research 35(Database-Issue): 208-212 (2007)
	2006
32		Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) 2006: 415-416
31		Emidio Capriotti, Remo Calabrese, Rita Casadio: Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinformatics 22(22): 2729-2734 (2006)
30		Rita Casadio: Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics -- Part 1. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 321-322 (2006)
29		Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006)
	2005
28		Rita Casadio, Gene Myers: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings Springer 2005
27		Emidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio: Predicting protein stability changes from sequences using support vector machines. ECCB/JBI 2005: 58
26		Piero Fariselli, Pier Luigi Martelli, Rita Casadio: A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinformatics 6(S-4): (2005)
25		Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone: Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinformatics 6(S-4): (2005)
24		Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella: Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinformatics 6(S-4): (2005)
23		Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio: TRAMPLE: the transmembrane protein labelling environment. Nucleic Acids Research 33(Web-Server-Issue): 198-201 (2005)
22		Emidio Capriotti, Piero Fariselli, Rita Casadio: I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Research 33(Web-Server-Issue): 306-310 (2005)
	2004
21		Emidio Capriotti, Piero Fariselli, Rita Casadio: A neural-network-based method for predicting protein stability changes upon single point mutations. ISMB/ECCB (Supplement of Bioinformatics) 2004: 63-68
20		Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal: ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinformatics 20(8): 1322-1324 (2004)
	2003
19		Pier Luigi Martelli, Piero Fariselli, Rita Casadio: An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. ISMB (Supplement of Bioinformatics) 2003: 205-211
18		Piero Fariselli, Giacomo Finocchiaro, Rita Casadio: Prediction of Signal Peptide in Proteins with Neural Networks. WIRN 2003: 237-244
17		Piero Fariselli, Giacomo Finocchiaro, Rita Casadio: SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. Bioinformatics 19(18): 2498-2499 (2003)
16		Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio: MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinformatics 19(4): 500-505 (2003)
15		Rita Casadio, Piero Fariselli, Pier Luigi Martelli: In silico prediction of the structure of membrane proteins: Is it feasible? Briefings in Bioinformatics 4(4): 341-348 (2003)
	2002
14		Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53
	2001
13		Gianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio: Improved prediction of the number of residue contacts in proteins by recurrent neural networks. ISMB (Supplement of Bioinformatics) 2001: 234-242
12		Piero Fariselli, Rita Casadio: RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinformatics 17(1): 202-204 (2001)
11		Piero Fariselli, Rita Casadio: Prediction of disulfide connectivity in proteins. Bioinformatics 17(10): 957-964 (2001)
	2000
10		Piero Fariselli, Rita Casadio: Prediction of the Number of Residue Contacts in Proteins. ISMB 2000: 146-151
	1999
9		Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli: A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. ISMB 1999: 68-76
	1997
8		Piero Fariselli, Rita Casadio: Pseudodihedral Potential of Protein Residues and the Prediction of Folding. BCEC 1997: 112-121
7		P. Arrigo, Piero Fariselli, Rita Casadio: Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. ISMB 1997: 44-47
6		Francesco Vivarelli, Piero Fariselli, Rita Casadio: The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. Neural Computing and Applications 6(1): 57-62 (1997)
	1996
5		P. Arrigo, Piero Fariselli, Rita Casadio: The Identification of Locally Ordered Features an Completely unaligned Genomic Sequences by using an Unsupervised Neural Classifier. German Conference on Bioinformatics 1996: 156-158
4		Burkhard Rost, Rita Casadio, Piero Fariselli: Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB 1996: 192-200
3		Piero Fariselli, Rita Casadio: HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins. Computer Applications in the Biosciences 12(1): 41-48 (1996)
	1995
2		Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli: Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. ISMB 1995: 81-88
1		Francesco Vivarelli, G. Giusti, M. Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio: LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins. Computer Applications in the Biosciences 11(3): 253-260 (1995)

Coauthor Index

1	Giovanni Aloisio	[42]
2	Mauro Amico	[23] [29]
3	P. Arrigo	[5] [7]
4	Pierre Baldi	[13]
5	Lisa Bartoli	[38] [41] [51] [54]
6	Nir Ben-Tal	[20]
7	Carine Berezin	[20]
8	Angelo Boccia	[24]
9	Remo Calabrese	[27] [31] [38]
10	Renato Campanini	[1]
11	Emidio Capriotti	[21] [22] [27] [31] [35] [36] [48]
12	Luciana Carota	[41]
13	Mario Compiani	[1] [2] [9]
14	Nunzio D'Agostino	[24]
15	Arne Elofsson	[29]
16	Italo Epicoco	[42]
17	Iakes Ezkurdia	[51]
18	Piero Fariselli	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [26] [27] [29] [32] [33] [35] [38] [39] [40] [41] [42] [43] [44] [45] [46] [48] [49] [50] [51] [52] [53] [54]
19	Michele Finelli	[16] [23] [29]
20	Giacomo Finocchiaro	[17] [18]
21	Sandro Fiore	[42]
22	G. Giusti	[1]
23	Fabian Glaser	[20]
24	Alessandro Guffanti	[25]
25	Gunnar von Heijne	[29]
26	Manuela Helmer-Citterich	[25] [37]
27	David Jones	[29]
28	Anders Krogh	[14] [29] [44]
29	Pietro di Lena	[40] [43] [45] [46] [50] [53]
30	Giorgio Maggi	[41]
31	Davide Marchignoli	[16]
32	Luciano Margara	[39] [40] [43] [45] [46] [50] [52] [53]
33	Pier Luigi Martelli	[9] [14] [15] [16] [19] [23] [26] [29] [32] [33] [41] [47] [49] [54]
34	Giancarlo Mauri	[25]
35	Filippo Medri	[40] [43] [45] [46]
36	Luciano Milanesi	[24] [25]
37	Maria Mirto	[42]
38	Damiano G. Mita	[38]
39	Daniele Molinini	[44]
40	Ludovica Montanucci	[41] [49]
41	Eugene W. Myers (Gene Myers)	[28]
42	Salvatore Di Nardo	[24]
43	Giovanni Paolella	[24]
44	Myriam Passamano	[24]
45	Inbal Paz	[20]
46	Graziano Pesole	[25] [37]
47	Mauro Petrillo	[24]
48	Andrea Pierleoni	[32] [33] [47]
49	Gianluca Pollastri	[13]
50	Tal Pupko	[20]
51	Josef Rosenberg	[20]
52	Ivan Rossi	[16] [23] [29] [35] [42] [48] [54]
53	Burkhard Rost	[4]
54	Cecilia Saccone	[25]
55	Leandra Sepe	[24]
56	Gianluca Tasco	[24]
57	Michael L. Tress	[51]
58	Alfonso Valencia	[51]
59	Giorgio Valle	[25]
60	Marco Vassura	[39] [40] [43] [45] [46] [50] [52] [53]
61	Håkan Viklund	[29]
62	M. Villani	[1]
63	Francesco Vivarelli	[1] [2] [6]
64	Andrea Zauli	[23] [29]

Colors in the list of coauthors