J. Michael Cherry

List of publications from the DBLP Bibliography Server - FAQ

Ask others: ACM DL/Guide -

- CSB - MetaPress - Google - Bing - Yahoo

	2012
30		J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Robert S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong: Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Research 40(Database-Issue): 700-705 (2012)
	2011
29		Arun Rangarajan, Tim Schedl, Karen Yook, Juancarlos Chan, Stephen Haenel, Lolly Otis, Sharon Faelten, Tracey DePellegrin-Connelly, Ruth Isaacson, Marek S. Skrzypek, J. Michael Cherry, Paul W. Sternberg, Hans-Michael Müller: Toward an interactive article: integrating journals and biological databases. BMC Bioinformatics 12: 175 (2011)
28		Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki: Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research 39(Database-Issue): 7-10 (2011)
	2010
27		Stacia R. Engel, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Eurie L. Hong, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Julie Park, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kara Dolinski, David Botstein, J. Michael Cherry: Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Research 38(Database-Issue): 433-436 (2010)
	2008
26		Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen R. Christie, Julie Park, Gail Binkley, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu, Kara Dolinski, David Botstein, J. Michael Cherry: Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Research 36(Database-Issue): 577-581 (2008)
	2007
25		Colleen E. Crangle, J. Michael Cherry, Eurie L. Hong, Alex Zbyslaw: Mining experimental evidence of molecular function claims from the literature. Bioinformatics 23(23): 3232-3240 (2007)
24		Robert S. Nash, Shuai Weng, Benjamin C. Hitz, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Michael S. Livstone, Rose Oughtred, Julie Park, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Kara Dolinski, David Botstein, J. Michael Cherry: Expanded protein information at SGD: new pages and proteome browser. Nucleic Acids Research 35(Database-Issue): 468-471 (2007)
	2006
23		Jodi E. Hirschman, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Michael S. Livstone, Robert S. Nash, Julie Park, Rose Oughtred, Marek S. Skrzypek, Barry Starr, Chandra L. Theesfeld, Jennifer Williams, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Mayank K. Thanawala, Shuai Weng, Kara Dolinski, David Botstein, J. Michael Cherry: Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. Nucleic Acids Research 34(Database-Issue): 442-445 (2006)
22		Nicholas A. Stover, Cynthia J. Krieger, Gail Binkley, Qing Dong, Dianna G. Fisk, Robert S. Nash, Anand Sethuraman, Shuai Weng, J. Michael Cherry: Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research. Nucleic Acids Research 34(Database-Issue): 500-503 (2006)
	2005
21		Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry: Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). Nucleic Acids Research 33(Database-Issue): 374-377 (2005)
20		Thomas Yan, Danny Yoo, Tanya Z. Berardini, Lukas A. Mueller, Dan C. Weems, Shuai Weng, J. Michael Cherry, Seung Yon Rhee: PatMatch: a program for finding patterns in peptide and nucleotide sequences. Nucleic Acids Research 33(Web-Server-Issue): 262-266 (2005)
	2004
19		Colleen E. Crangle, Alex Zbyslaw, J. Michael Cherry, Eurie L. Hong: Concept Extraction and Synonymy Management for Biomedical Information Retrieval. TREC 2004
18		Elizabeth I. Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, J. Michael Cherry, Gavin Sherlock: GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20(18): 3710-3715 (2004)
17		C. Wiederkehr, R. Basavaraj, Cyril Sarrauste de Menthière, R. Koch, U. Schlecht, Leandro Hermida, Benjamin Masdoua, R. Ishii, V. Cassen, M. Yamamoto, Christopher Lane, J. Michael Cherry, N. Lamb, Michael Primig: Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation. Bioinformatics 20(5): 808-811 (2004)
16		Selina S. Dwight, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, Shuai Weng, David Botstein, J. Michael Cherry: Saccharomyces genome database: Underlying principles and organisation. Briefings in Bioinformatics 5(1): 9-22 (2004)
15		Michael Bada, Robert Stevens, Carole A. Goble, Yolanda Gil, Michael Ashburner, Judith A. Blake, J. Michael Cherry, Midori A. Harris, Suzanna Lewis: A short study on the success of the Gene Ontology. J. Web Sem. 1(2): 235-240 (2004)
14		Karen R. Christie, Shuai Weng, Rama Balakrishnan, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Research 32(Database-Issue): 311-314 (2004)
13		C. Wiederkehr, R. Basavaraj, Cyril Sarrauste de Menthière, Leandro Hermida, R. Koch, U. Schlecht, A. Amon, Sophie Brachat, Michael Breitenbach, Peter Briza, Sandrine Caburet, J. Michael Cherry, R. Davis, A. Deutschbauer, H. G. Dickinson, T. Dumitrescu, M. Fellous, A. Goldman, J. Anton Grootegoed, R. Scott Hawley, R. Ishii, B. Jégou, R. J. Kaufman, F. Klein, N. Lamb, B. Maro, K. Nasmyth, A. Nicolas, T. Orr-Weaver, Peter Philippsen, C. Pineau, K. P. Rabitsch, V. Reinke, H. Roest, W. Saunders, M. Schröder, Tim Schedl, M. Siep, A. Villeneuve, Debra J. Wolgemuth, M. Yamamoto, D. Zickler, R. E. Esposito, Michael Primig: GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Research 32(Database-Issue): 560-567 (2004)
	2003
12		Qing Dong, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Shuai Weng, David Botstein, J. Michael Cherry: Gene Function, Metabolic Pathways and Comparative Genomics in Yeast. CSB 2003: 437-438
11		Shuai Weng, Qing Dong, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. Nucleic Acids Research 31(1): 216-218 (2003)
10		Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Michael Cherry, David Botstein, Patrick O. Brown, Ash A. Alizadeh: SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Nucleic Acids Research 31(1): 219-223 (2003)
	2002
9		Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry: Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Research 30(1): 69-72 (2002)
	2001
8		Rob M. Ewing, J. Michael Cherry: Visualization of expression clusters using Sammon's non-linear mapping. Bioinformatics 17(7): 658-659 (2001)
7		Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry: The Stanford Microarray Database. Nucleic Acids Research 29(1): 152-155 (2001)
6		Catherine A. Ball, Heng Jin, Gavin Sherlock, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Mark Schroeder, David Botstein, J. Michael Cherry: Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. Nucleic Acids Research 29(1): 80-81 (2001)
	2000
5		Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng Jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry: Integrating functional genomic information into the Saccharomyces Genome Database. Nucleic Acids Research 28(1): 77-80 (2000)
	1999
4		Stephen A. Chervitz, Erich T. Hester, Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Gail Juvik, Alice Malekian, Shannon Roberts, TaiYun Roe, Charles R. Scafe, Mark Schroeder, Gavin Sherlock, Shuai Weng, Yan Zhu, J. Michael Cherry, David Botstein: Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. Nucleic Acids Research 27(1): 74-78 (1999)
3		Seung Yon Rhee, Shuai Weng, Deverie K. Bongard-Pierce, Margarita Garcia-Hernandez, Alice Malekian, David J. Flanders, J. Michael Cherry: Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database. Nucleic Acids Research 27(1): 79-84 (1999)
	1998
2		J. Michael Cherry, Caroline Adler, Catherine A. Ball, Stephen A. Chervitz, Selina S. Dwight, Erich T. Hester, Yankai Jia, Gail Juvik, TaiYun Roe, Mark Schroeder, Shuai Weng, David Botstein: SGD: Saccharomyces Genome Database. Nucleic Acids Research 26(1): 73-79 (1998)
1		David J. Flanders, Shuai Weng, Fabien X. Petel, J. Michael Cherry: AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative. Nucleic Acids Research 26(1): 80-84 (1998)

Coauthor Index

Colors in the list of coauthors

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team —

Data released under the ODC-BY 1.0 license — See also our legal information page

1	Caroline Adler	[2]
2	Ash A. Alizadeh	[10]
3	A. Amon	[13]
4	Craig Amundsen	[30]
5	Rey Andrada	[6] [11] [14] [16] [23]
6	Michael Ashburner	[15]
7	Terri K. Attwood (Teresa K. Attwood)	[28]
8	Michael Bada	[15]
9	Amos Bairoch	[28]
10	Rama Balakrishnan	[11] [12] [14] [16] [21] [23] [24] [26] [27] [30]
11	Catherine A. Ball	[2] [4] [5] [6] [7] [9]
12	R. Basavaraj	[13] [17]
13	Alex Bateman	[28]
14	Tanya Z. Berardini	[20]
15	Gail Binkley	[5] [6] [7] [9] [10] [11] [12] [14] [16] [21] [22] [23] [24] [26] [27] [30]
16	Judith A. Blake	[15] [28]
17	Deverie K. Bongard-Pierce	[3]
18	David Botstein	[2] [4] [5] [6] [7] [9] [10] [11] [12] [14] [16] [18] [21] [23] [24] [26] [27]
19	Elizabeth I. Boyle	[18]
20	Sophie Brachat	[13]
21	Michael Breitenbach	[13]
22	Peter Briza	[13]
23	Patrick O. Brown	[7] [10]
24	Carol J. Bult	[28]
25	Sandrine Caburet	[13]
26	V. Cassen	[17]
27	Esther T. Chan	[30]
28	Juancarlos Chan	[29]
29	Stephen A. Chervitz	[2] [4]
30	Rex L. Chisholm	[28]
31	Karen R. Christie	[9] [11] [12] [14] [16] [21] [23] [24] [26] [27] [30]
32	Guy Cochrane	[28]
33	Charles E. Cook	[28]
34	Maria C. Costanzo	[11] [12] [14] [16] [21] [23] [24] [26] [27] [30]
35	Colleen E. Crangle	[19] [25]
36	R. Davis	[13]
37	Tracey DePellegrin-Connelly	[29]
38	A. Deutschbauer	[13]
39	H. G. Dickinson	[13]
40	Maximilian Diehn	[10]
41	Kara Dolinski	[4] [5] [6] [9] [11] [12] [14] [16] [21] [23] [24] [26] [27]
42	Qing Dong	[11] [12] [14] [16] [21] [22] [23] [24] [26]
43	T. Dumitrescu	[13]
44	Selina S. Dwight	[2] [4] [5] [6] [7] [9] [11] [12] [14] [16] [21] [23] [24] [26] [27] [30]
45	Michael B. Eisen	[7]
46	Stacia R. Engel	[11] [12] [14] [16] [21] [23] [24] [26] [27] [30]
47	Janan T. Eppig	[28]
48	R. E. Esposito	[13]
49	Rob M. Ewing	[8]
50	Sharon Faelten	[29]
51	Becket Feierbach	[14] [16]
52	M. Fellous	[13]
53	Dawn Field	[28]
54	Dianna G. Fisk	[9] [11] [12] [14] [16] [21] [22] [23] [24] [26] [27] [30]
55	David J. Flanders	[1] [3]
56	Michael Y. Galperin	[28]
57	Margarita Garcia-Hernandez	[3]
58	Pascale Gaudet	[28]
59	Robert Gentleman	[28]
60	Yolanda Gil	[15]
61	Carole A. Goble	[15] [28]
62	Takashi Gojobori	[28]
63	A. Goldman	[13]
64	Jeremy Gollub	[18]
65	J. Anton Grootegoed	[13]
66	Stephen Haenel	[29]
67	John M. Hancock	[28]
68	Midori A. Harris	[4] [5] [6] [9] [15]
69	R. Scott Hawley	[13]
70	Leandro Hermida	[13] [17]
71	Tina Hernandez-Boussard	[7] [10]
72	Erich T. Hester	[2] [4]
73	Jodi E. Hirschman	[12] [14] [16] [21] [23] [24] [26] [27] [30]
74	Benjamin C. Hitz	[24] [26] [27] [30]
75	Eurie L. Hong	[11] [12] [14] [16] [19] [21] [23] [24] [25] [26] [27] [30]
76	Douglas G. Howe	[28]
77	Tadashi Imanishi	[28]
78	Ruth Isaacson	[29]
79	R. Ishii	[13] [17]
80	Laurie Issel-Tarver	[5] [6] [9] [11] [12] [14] [16]
81	B. Jégou	[13]
82	Yankai Jia	[2]
83	Heng Jin	[5] [6] [7] [10] [18]
84	Gail Juvik	[2] [4]
85	Miroslava Kaloper	[5] [7]
86	Kalpana Karra	[30]
87	Ilene Karsch-Mizrachi (Ilene Mizrachi)	[28]
88	Andrew Kasarskis	[5] [7]
89	R. J. Kaufman	[13]
90	Janet Kelso	[28]
91	F. Klein	[13]
92	R. Koch	[13] [17]
93	Cynthia J. Krieger	[22] [26] [27] [30]
94	N. Lamb	[13] [17]
95	David Landsman	[28]
96	Christopher Lane	[11] [14] [16] [17] [21] [23] [24]
97	Suzanna Lewis (Suzanna E. Lewis)	[15] [28]
98	Michael S. Livstone	[23] [24] [26] [27]
99	Alice Malekian	[3] [4]
100	B. Maro	[13]
101	Benjamin Masdoua	[17]
102	John C. Matese	[6] [7] [10]
103	Cyril Sarrauste de Menthière	[13] [17]
104	Stuart R. Miyasato	[23] [24] [26] [27] [30]
105	Lukas A. Mueller	[20]
106	Hans-Michael Müller	[29]
107	Robert S. Nash	[12] [14] [16] [21] [22] [23] [24] [26] [27] [30]
108	K. Nasmyth	[13]
109	A. Nicolas	[13]
110	Sandra E. Orchard	[28]
111	Sidney D. Orr	[5]
112	T. Orr-Weaver	[13]
113	Lolly Otis	[29]
114	B. F. Francis Ouellette	[28]
115	Rose Oughtred	[21] [23] [24] [26] [27]
116	Julie Park	[23] [24] [26] [27] [30]
117	Fabien X. Petel	[1]
118	Peter Philippsen	[13]
119	C. Pineau	[13]
120	Michael Primig	[13] [17]
121	K. P. Rabitsch	[13]
122	Shoba Ranganathan	[28]
123	Arun Rangarajan	[29]
124	Christian A. Rees	[10]
125	V. Reinke	[13]
126	Seung Yon Rhee	[3] [20]
127	Lorna Richardson	[28]
128	Shannon Roberts	[4]
129	Philippe Rocca-Serra	[28]
130	TaiYun Roe	[2] [4]
131	H. Roest	[13]
132	Susanna-Assunta Sansone	[28]
133	W. Saunders	[13]
134	Charles R. Scafe	[4] [5]
135	Tim Schedl	[13] [29]
136	U. Schlecht	[13] [17]
137	Paul N. Schofield	[28]
138	M. Schröder	[13]
139	Mark Schroeder	[2] [4] [5] [6] [9] [11] [14] [16] [23] [24]
140	Anand Sethuraman	[9] [11] [12] [14] [16] [21] [22] [23] [24]
141	Gavin Sherlock	[4] [5] [6] [7] [9] [10] [18]
142	M. Siep	[13]
143	Matt Simison	[30]
144	Marek S. Skrzypek	[21] [23] [24] [26] [27] [29] [30]
145	Damian Smedley	[28]
146	Christopher Southan	[28]
147	Paul T. Spellman	[7]
148	Barry Starr	[14] [16] [23]
149	Paul W. Sternberg	[29]
150	Robert Stevens (Robert D. Stevens)	[15]
151	Nicholas A. Stover	[22]
152	Tin Wee Tan	[28]
153	Tatiana A. Tatusova	[28]
154	Chris F. Taylor	[28]
155	Mayank K. Thanawala	[23]
156	Chandra L. Theesfeld	[11] [12] [14] [16] [21] [23] [24]
157	A. Villeneuve	[13]
158	Dan C. Weems	[20]
159	Shuai Weng	[1] [2] [3] [4] [5] [6] [7] [9] [11] [12] [14] [16] [18] [20] [21] [22] [23] [24] [26] [27] [30]
160	Patricia L. Whetzel	[28]
161	Owen White	[28]
162	C. Wiederkehr	[13] [17]
163	Jennifer Williams	[23]
164	Debra J. Wolgemuth	[13]
165	Edith D. Wong	[26] [27] [30]
166	M. Yamamoto	[13] [17]
167	Chisato Yamasaki	[28]
168	Thomas Yan	[20]
169	Danny Yoo	[20]
170	Karen Yook	[29]
171	Alex Zbyslaw	[19] [25]
172	Kathy K. Zhu	[26]
173	Yan Zhu	[4] [5]
174	D. Zickler	[13]