| 2009 | ||
|---|---|---|
| 45 | David Andrzejewski, Xiaojin Zhu, Mark Craven: Incorporating domain knowledge into topic modeling via Dirichlet Forest priors. ICML 2009: 4 | |
| 44 | Adam A. Smith, Aaron Vollrath, Christopher A. Bradfield, Mark Craven: Clustered alignments of gene-expression time series data. Bioinformatics 25(12): (2009) | |
| 2008 | ||
| 43 | Ana L. C. Bazzan, Mark Craven, Natália F. Martins: Advances in Bioinformatics and Computational Biology, Third Brazilian Symposium on Bioinformatics, BSB 2008, Santo André, Brazil, August 28-30, 2008. Proceedings Springer 2008 | |
| 42 | Burr Settles, Mark Craven: An Analysis of Active Learning Strategies for Sequence Labeling Tasks. EMNLP 2008: 1070-1079 | |
| 41 | Mark Craven: Learning Expressive Models of Gene Regulation. ILP 2008: 4 | |
| 40 | Keith Noto, Mark Craven: Learning Hidden Markov Models for Regression using Path Aggregation. UAI 2008: 444-451 | |
| 2007 | ||
| 39 | Yue Pan, Tim Durfee, Joseph Bockhorst, Mark Craven: Connecting quantitative regulatory-network models to the genome. ISMB/ECCB (Supplement of Bioinformatics) 2007: 367-376 | |
| 38 | Burr Settles, Mark Craven, Soumya Ray: Multiple-Instance Active Learning. NIPS 2007 | |
| 37 | Keith Noto, Mark Craven: Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects. Bioinformatics 23(2): 156-162 (2007) | |
| 2006 | ||
| 36 | Tina Eliassi-Rad, Lyle H. Ungar, Mark Craven, Dimitrios Gunopulos: Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Philadelphia, PA, USA, August 20-23, 2006 ACM 2006 | |
| 35 | Andrew B. Goldberg, David Andrzejewski, Jurgen Van Gael, Burr Settles, Xiaojin Zhu, Mark Craven: Ranking Biomedical Passages for Relevance and Diversity: University of Wisconsin, Madison at TREC Genomics 2006. TREC 2006 | |
| 34 | Keith Noto, Mark Craven: A specialized learner for inferring structured cis-regulatory modules. BMC Bioinformatics 7: 528 (2006) | |
| 2005 | ||
| 33 | Soumya Ray, Mark Craven: Supervised versus multiple instance learning: an empirical comparison. ICML 2005: 697-704 | |
| 32 | Thomas Brow, Burr Settles, Mark Craven: Classifying Biomedical Articles by Making Localized Decisions. TREC 2005 | |
| 31 | Soumya Ray, Mark Craven: Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text. BMC Bioinformatics 6(S-1): (2005) | |
| 2004 | ||
| 30 | Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna: Multiple Alignment of Rearranged Genomes. CSB 2004: 738-739 | |
| 29 | Joseph Bockhorst, Mark Craven: Markov Networks for Detecting Overalpping Elements in Sequence Data. NIPS 2004 | |
| 28 | Keith Noto, Mark Craven: Learning Regulatory Network Models that Represent Regulator States and Roles. Regulatory Genomics 2004: 52-64 | |
| 27 | Burr Settles, Mark Craven: Exploiting Zone Information, Syntactic Rules, and Informative Terms in Gene Ontology Annotation of Biomedical Documents. TREC 2004 | |
| 2003 | ||
| 26 | Marios Skounakis, Mark Craven: Evidence combination in biomedical natural-language processing. BIOKDD 2003: 25-32 | |
| 25 | Marios Skounakis, Mark Craven, Soumya Ray: Hierarchical Hidden Markov Models for Information Extraction. IJCAI 2003: 427-433 | |
| 24 | Joseph Bockhorst, Yu Qiu, Jeremy D. Glasner, Mingzhu Liu, Frederick R. Blattner, Mark Craven: Predicting bacterial transcription units using sequence and expression data. ISMB (Supplement of Bioinformatics) 2003: 34-43 | |
| 23 | Joseph Bockhorst, Mark Craven, David Page, Jude W. Shavlik, Jeremy D. Glasner: A Bayesian Network Approach to Operon Prediction. Bioinformatics 19(10): 1227-1235 (2003) | |
| 22 | David Page, Mark Craven: Biological applications of multi-relational data mining. SIGKDD Explorations 5(1): 69-79 (2003) | |
| 2002 | ||
| 21 | Joseph Bockhorst, Mark Craven: Exploiting Relations Among Concepts to Acquire Weakly Labeled Training Data. ICML 2002: 43-50 | |
| 20 | Mark Craven: The Genomics of a Signaling Pathway: A KDD Cup Challenge Task. SIGKDD Explorations 4(2): 97-98 (2002) | |
| 2001 | ||
| 19 | Soumya Ray, Mark Craven: Representing Sentence Structure in Hidden Markov Models for Information Extraction. IJCAI 2001: 1273-1279 | |
| 18 | Joseph Bockhorst, Mark Craven: Refining the Structure of a Stochastic Context-Free Grammar. IJCAI 2001: 1315-1322 | |
| 17 | Mark Craven, Seán Slattery: Relational Learning with Statistical Predicate Invention: Better Models for Hypertext. Machine Learning 43(1/2): 97-119 (2001) | |
| 2000 | ||
| 16 | Mark Craven, David Page, Jude W. Shavlik, Joseph Bockhorst, Jeremy D. Glasner: Using Multiple Levels of Learning and Diverse Evidence to Uncover Coordinately Controlled Genes. ICML 2000: 199-206 | |
| 15 | Mark Craven, David Page, Jude W. Shavlik, Joseph Bockhorst, Jeremy D. Glasner: A Probabilistic Learning Approach to Whole-Genome Operon Prediction. ISMB 2000: 116-127 | |
| 14 | Mark Craven, Dan DiPasquo, Dayne Freitag, Andrew McCallum, Tom M. Mitchell, Kamal Nigam, Seán Slattery: Learning to construct knowledge bases from the World Wide Web. Artif. Intell. 118(1-2): 69-113 (2000) | |
| 1999 | ||
| 13 | Mark Craven, Johan Kumlien: Constructing Biological Knowledge Bases by Extracting Information from Text Sources. ISMB 1999: 77-86 | |
| 1998 | ||
| 12 | Mark Craven, Dan DiPasquo, Dayne Freitag, Andrew McCallum, Tom M. Mitchell, Kamal Nigam, Seán Slattery: Learning to Extract Symbolic Knowledge from the World Wide Web. AAAI/IAAI 1998: 509-516 | |
| 11 | Mark Craven, Seán Slattery, Kamal Nigam: First-Order Learning for Web Mining. ECML 1998: 250-255 | |
| 10 | Seán Slattery, Mark Craven: Combining Statistical and Relational Methods for Learning in Hypertext Domains. ILP 1998: 38-52 | |
| 1997 | ||
| 9 | Mark Craven, Jude W. Shavlik: Understanding Time-Series Networks: A Case Study in Rule Extraction. Int. J. Neural Syst. 8(4): 373-384 (1997) | |
| 1995 | ||
| 8 | Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher: Predicting Protein Folding Classes without Overly Relying on Homology. ISMB 1995: 98-106 | |
| 7 | Mark Craven, Jude W. Shavlik: Extracting Tree-Structured Representations of Trained Networks. NIPS 1995: 24-30 | |
| 6 | Jeffrey C. Jackson, Mark Craven: Learning Sparse Perceptrons. NIPS 1995: 654-660 | |
| 1994 | ||
| 5 | Mark Craven, Jude W. Shavlik: Using Sampling and Queries to Extract Rules from Trained Neural Networks. ICML 1994: 37-45 | |
| 4 | Mark Craven, Jude W. Shavlik: Machine Learning Approaches to Gene Recognition. IEEE Expert 9(2): 2-10 (1994) | |
| 1993 | ||
| 3 | Mark Craven, Jude W. Shavlik: Learning Symbolic Rules Using Artificial Neural Networks. ICML 1993: 73-80 | |
| 2 | Mark Craven, Jude W. Shavlik: Learning to Represent Codons: A Challenge Problem for Constructive Induction. IJCAI 1993: 1319-1324 | |
| 1991 | ||
| 1 | Geoffrey G. Towell, Mark Craven, Jude W. Shavlik: Constructive Induction in Knowledge-Based Neural Networks. ML 1991: 213-217 | |