Thomas Dandekar

	2008
29		Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller: Identifying functional modules in protein-protein interaction networks: an integrated exact approach. ISMB 2008: 223-231
28		Matthias Wolf, Benjamin Ruderisch, Thomas Dandekar, Jörg Schultz, Tobias Müller: ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments. Bioinformatics 24(20): 2401-2402 (2008)
27		Christian Selig, Matthias Wolf, Tobias Müller, Thomas Dandekar, Jörg Schultz: The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Research 36(Database-Issue): 377-380 (2008)
	2007
26		Roland Schwarz, Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar: Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics 8: (2007)
	2006
25		Chunguang Liang, Thomas Dandekar: inGeno - an integrated genome and ortholog viewer for improved genome to genome comparisons. BMC Bioinformatics 7: 461 (2006)
24		Philipp N. Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich: XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics 7: 490 (2006)
23		Philipp N. Seibel, Tobias Müller, Thomas Dandekar, Jörg Schultz, Matthias Wolf: 4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7: 498 (2006)
22		Torben Friedrich, Birgit Pils, Thomas Dandekar, Jörg Schultz, Tobias Müller: Modelling interaction sites in protein domains with interaction profile hidden Markov models. Bioinformatics 22(23): 2851-2857 (2006)
21		Jörg Schultz, Tobias Müller, Marco Achtziger, Philipp N. Seibel, Thomas Dandekar, Matthias Wolf: The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. Nucleic Acids Research 34(Web-Server-Issue): 704-707 (2006)
	2005
20		Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, R. Heiner Schirmer, Stefan Schuster, Thomas Dandekar: YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinformatics 6: 135 (2005)
19		Joachim Friedrich, Thomas Dandekar, Matthias Wolf, Tobias Müller: ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. Bioinformatics 21(9): 2108-2109 (2005)
18		Peter Bengert, Thomas Dandekar: Current efforts in the analysis of RNAi and RNAi target genes. Briefings in Bioinformatics 6(1): 72-85 (2005)
17		Matthias Wolf, Joachim Friedrich, Thomas Dandekar, Tobias Müller: CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In Silico Biology 5: (2005)
16		Tobias Penzkofer, Thomas Dandekar, Tomasz Zemojtel: L1Base: from functional annotation to prediction of active LINE-1 elements. Nucleic Acids Research 33(Database-Issue): 498-500 (2005)
	2004
15		Thomas Dandekar, Steffen Schmidt: Metabolites, pathway flexibility. In Silico Biology 5: (2004)
14		M. Dünßer, R. Lampidis, Steffen Schmidt, Dietmar Seipel, Thomas Dandekar: Integration of Data in Pathogenomics: Three Layers of cellular complexity and an XML-based Framework. J. Integrative Bioinformatics 1(1): (2004)
13		Daniel Faller, Thomas Reinheckel, Daniel Wenzler, Sascha Hagemann, Ke Xiao, Josef Honerkamp, Christoph Peters, Thomas Dandekar, Jens Timmer: An Open Source Protein Gel Documentation System for Proteome Analyses. Journal of Chemical Information and Modeling 44(1): 168-169 (2004)
12		Peter Bengert, Thomas Dandekar: Riboswitch finder tool for identification of riboswitch RNAs. Nucleic Acids Research 32(Web-Server-Issue): 154-159 (2004)
11		Helge Bertram, Thomas Dandekar: Stoffwechselanalyse: Der Weg vom Genom zum metabolischen Netzwerk (Pathway Analysis: On the Route from Genomics to Metabolic Networks). it - Information Technology 46(1): 5-11 (2004)
	2003
10		Tobias Müller, Sven Rahmann, Thomas Dandekar, Matthias Wolf: Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances. German Conference on Bioinformatics 2003: 97-101
9		Peter Bengert, Thomas Dandekar: A software tool-box for analysis of regulatory RNA elements. Nucleic Acids Research 31(13): 3441-3445 (2003)
	2002
8		Steffen Schmidt, Thomas Dandekar: Metabolic Pathways. Gene Regulations and Metabolism 2002: 251-272
7		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18(2): 351-361 (2002)
6		Thomas Dandekar, Fuli Du, R. Heiner Schirmer, Steffen Schmidt: Medical Target Prediction From Genome Sequence: Combining Different Sequence Analysis Algorithms with Expert Knowledge and Input From Artificial Intelligence Approaches. Computers & Chemistry 26(1): 15-21 (2002)
5		Steffen Schmidt, Peer Bork, Thomas Dandekar: A Versatile Structural Domain Analysis Server Using Profile Weight Matrices. Journal of Chemical Information and Computer Sciences 42(2): 405-407 (2002)
	2000
4		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. German Conference on Bioinformatics 2000: 115-120
	1998
3		Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork: Pathway alignment: Application in the comparative analysis of glycolysis. German Conference on Bioinformatics 1998
2		Thomas Dandekar, Katrin Beyer, Peer Bork, Mary-Rose Kenealy, Kostas Pantopoulos, Mathias Hentze, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, Sonja Schreiber: Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches. Bioinformatics 14(3): 271-278 (1998)
	1997
1		Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber: Systematic genomic screening and analysis of mRNA in the 5' and 3` untranslated region. German Conference on Bioinformatics 1997: 31-32

Coauthor Index

1	Marco Achtziger	[21]
2	Peter Bengert	[9] [12] [18]
3	Helge Bertram	[11]
4	Katrin Beyer	[1] [2]
5	Peer Bork	[1] [2] [3] [5]
6	Marcus T. Dittrich	[29]
7	Fuli Du	[6]
8	M. Dünßer	[14]
9	Bernd Engels	[20]
10	Daniel Faller	[13]
11	Gilles Flouriot	[1] [2]
12	Joachim Friedrich	[17] [19]
13	Torben Friedrich	[22]
14	Frank Gannon	[1] [2]
15	Robert Giegerich	[24]
16	Gareth Griffiths	[26]
17	Sascha Hagemann	[13]
18	Sven Hartmeier	[24]
19	Michael Hecker	[26]
20	Mathias Hentze	[2]
21	Eik Hoffmann	[26]
22	Josef Honerkamp	[13]
23	Martijn A. Huynen	[3]
24	Christoph Kaleta	[26]
25	Axel von Kamp	[20]
26	W. Keller	[1]
27	Mary-Rose Kenealy	[2]
28	Gunnar W. Klau	[29]
29	Ina Koch	[4] [7]
30	Jan Krüger	[24]
31	Mark Kühnel	[26]
32	Sergei Kuznetsov	[26]
33	R. Lampidis	[14]
34	Chunguang Liang	[25] [26]
35	Kai Löwenthal	[24]
36	Henning Mersch	[24]
37	Ferdinand Moldenhauer	[4] [7]
38	Tobias Müller	[10] [17] [19] [21] [22] [23] [27] [28] [29]
39	Patrick Musch	[20]
40	Kostas Pantopoulos	[2]
41	Tobias Penzkofer	[16]
42	Christoph Peters	[13]
43	Thomas Pfeiffer	[4] [7]
44	Birgit Pils	[22]
45	Sven Rahmann	[10]
46	Thomas Reinheckel	[13]
47	Andreas Rosenwald	[29]
48	Benjamin Ruderisch	[28]
49	R. Heiner Schirmer	[6] [20]
50	Steffen Schmidt	[5] [6] [8] [14] [15]
51	Sonja Schreiber	[1] [2]
52	Jörg Schultz	[21] [22] [23] [27] [28]
53	Stefan Schuster	[3] [4] [7] [20] [26]
54	Roland Schwarz	[20] [26]
55	Knut Schwarzer	[24]
56	Philipp N. Seibel	[21] [23] [24]
57	Dietmar Seipel	[14]
58	Christian Selig	[27]
59	Vera Sonntag-Buck	[1] [2]
60	Jens Timmer	[13]
61	Daniel Wenzler	[13]
62	Matthias Wolf	[10] [17] [19] [21] [23] [27] [28]
63	Ke Xiao	[13]
64	Tomasz Zemojtel	[16]

Colors in the list of coauthors