Thomas Dandekar

	2012
34		Zeeshan Ahmed, Thomas Dandekar, Saman Majeed: Review: Semantic Web; Ontology Specific Languages for Web Application Development. IJWA 4(1): 33-41 (2012)
	2010
33		Yevhen Vainshtein, Mayka Sanchez, Alvis Brazma, Matthias W. Hentze, Thomas Dandekar, Martina U. Muckenthaler: The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays. BMC Bioinformatics 11: 112 (2010)
32		Daniela Beisser, Gunnar W. Klau, Thomas Dandekar, Tobias Müller, Marcus T. Dittrich: BioNet: an R-Package for the functional analysis of biological networks. Bioinformatics 26(8): 1129-1130 (2010)
31		Zeeshan Ahmed, Saman Majeed, Thomas Dandekar: Towards Design and Implementation of a Language Technology based Information Processor for PDM Systems CoRR abs/1008.1394: (2010)
	2009
30		Chunguang Liang, Alexander Schmid, María José López-Sánchez, Andres Moya, Roy Gross, Jörg Bernhardt, Thomas Dandekar: JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. BMC Bioinformatics 10: 391 (2009)
	2008
29		Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller: Identifying functional modules in protein-protein interaction networks: an integrated exact approach. ISMB 2008: 223-231
28		Matthias Wolf, Benjamin Ruderisch, Thomas Dandekar, Jörg Schultz, Tobias Müller: ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments. Bioinformatics 24(20): 2401-2402 (2008)
27		Christian Selig, Matthias Wolf, Tobias Müller, Thomas Dandekar, Jörg Schultz: The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Research 36(Database-Issue): 377-380 (2008)
	2007
26		Roland Schwarz, Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar: Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics 8: (2007)
	2006
25		Chunguang Liang, Thomas Dandekar: inGeno - an integrated genome and ortholog viewer for improved genome to genome comparisons. BMC Bioinformatics 7: 461 (2006)
24		Philipp N. Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich: XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics 7: 490 (2006)
23		Philipp N. Seibel, Tobias Müller, Thomas Dandekar, Jörg Schultz, Matthias Wolf: 4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7: 498 (2006)
22		Torben Friedrich, Birgit Pils, Thomas Dandekar, Jörg Schultz, Tobias Müller: Modelling interaction sites in protein domains with interaction profile hidden Markov models. Bioinformatics 22(23): 2851-2857 (2006)
21		Jörg Schultz, Tobias Müller, Marco Achtziger, Philipp N. Seibel, Thomas Dandekar, Matthias Wolf: The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. Nucleic Acids Research 34(Web-Server-Issue): 704-707 (2006)
	2005
20		Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, R. Heiner Schirmer, Stefan Schuster, Thomas Dandekar: YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinformatics 6: 135 (2005)
19		Joachim Friedrich, Thomas Dandekar, Matthias Wolf, Tobias Müller: ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. Bioinformatics 21(9): 2108-2109 (2005)
18		Peter Bengert, Thomas Dandekar: Current efforts in the analysis of RNAi and RNAi target genes. Briefings in Bioinformatics 6(1): 72-85 (2005)
17		Matthias Wolf, Joachim Friedrich, Thomas Dandekar, Tobias Müller: CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In Silico Biology 5: (2005)
16		Tobias Penzkofer, Thomas Dandekar, Tomasz Zemojtel: L1Base: from functional annotation to prediction of active LINE-1 elements. Nucleic Acids Research 33(Database-Issue): 498-500 (2005)
	2004
15		Thomas Dandekar, Steffen Schmidt: Metabolites, pathway flexibility. In Silico Biology 5: (2004)
14		M. Dünßer, R. Lampidis, Steffen Schmidt, Dietmar Seipel, Thomas Dandekar: Integration of Data in Pathogenomics: Three Layers of cellular complexity and an XML-based Framework. J. Integrative Bioinformatics 1(1): (2004)
13		Daniel Faller, Thomas Reinheckel, Daniel Wenzler, Sascha Hagemann, Ke Xiao, Josef Honerkamp, Christoph Peters, Thomas Dandekar, Jens Timmer: An Open Source Protein Gel Documentation System for Proteome Analyses. Journal of Chemical Information and Modeling 44(1): 168-169 (2004)
12		Peter Bengert, Thomas Dandekar: Riboswitch finder tool for identification of riboswitch RNAs. Nucleic Acids Research 32(Web-Server-Issue): 154-159 (2004)
11		Helge Bertram, Thomas Dandekar: Stoffwechselanalyse: Der Weg vom Genom zum metabolischen Netzwerk (Pathway Analysis: On the Route from Genomics to Metabolic Networks). it - Information Technology 46(1): 5-11 (2004)
	2003
10		Tobias Müller, Sven Rahmann, Thomas Dandekar, Matthias Wolf: Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances. German Conference on Bioinformatics 2003: 97-101
9		Peter Bengert, Thomas Dandekar: A software tool-box for analysis of regulatory RNA elements. Nucleic Acids Research 31(13): 3441-3445 (2003)
	2002
8		Steffen Schmidt, Thomas Dandekar: Metabolic Pathways. Gene Regulations and Metabolism 2002: 251-272
7		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinformatics 18(2): 351-361 (2002)
6		Thomas Dandekar, Fuli Du, R. Heiner Schirmer, Steffen Schmidt: Medical Target Prediction From Genome Sequence: Combining Different Sequence Analysis Algorithms with Expert Knowledge and Input From Artificial Intelligence Approaches. Computers & Chemistry 26(1): 15-21 (2002)
5		Steffen Schmidt, Peer Bork, Thomas Dandekar: A Versatile Structural Domain Analysis Server Using Profile Weight Matrices. Journal of Chemical Information and Computer Sciences 42(2): 405-407 (2002)
	2000
4		Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar: Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. German Conference on Bioinformatics 2000: 115-120
	1998
3		Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork: Pathway alignment: Application in the comparative analysis of glycolysis. German Conference on Bioinformatics 1998
2		Thomas Dandekar, Katrin Beyer, Peer Bork, Mary-Rose Kenealy, Kostas Pantopoulos, Matthias W. Hentze, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, Sonja Schreiber: Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches. Bioinformatics 14(3): 271-278 (1998)
	1997
1		Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber: Systematic genomic screening and analysis of mRNA in the 5' and 3` untranslated region. German Conference on Bioinformatics 1997: 31-32

Coauthor Index

1	Marco Achtziger	[21]
2	Zeeshan Ahmed	[31] [34]
3	Daniela Beisser	[32]
4	Peter Bengert	[9] [12] [18]
5	Jörg Bernhardt	[30]
6	Helge Bertram	[11]
7	Katrin Beyer	[1] [2]
8	Peer Bork	[1] [2] [3] [5]
9	Alvis Brazma	[33]
10	Marcus T. Dittrich	[29] [32]
11	Fuli Du	[6]
12	M. Dünßer	[14]
13	Bernd Engels	[20]
14	Daniel Faller	[13]
15	Gilles Flouriot	[1] [2]
16	Joachim Friedrich	[17] [19]
17	Torben Friedrich	[22]
18	Frank Gannon	[1] [2]
19	Robert Giegerich	[24]
20	Gareth Griffiths	[26]
21	Roy Gross	[30]
22	Sascha Hagemann	[13]
23	Sven Hartmeier	[24]
24	Michael Hecker	[26]
25	Matthias W. Hentze	[2] [33]
26	Eik Hoffmann	[26]
27	Josef Honerkamp	[13]
28	Martijn A. Huynen	[3]
29	Christoph Kaleta	[26]
30	Axel von Kamp	[20]
31	W. Keller	[1]
32	Mary-Rose Kenealy	[2]
33	Gunnar W. Klau	[29] [32]
34	Ina Koch	[4] [7]
35	Jan Krüger	[24]
36	Mark Kühnel	[26]
37	Sergei Kuznetsov	[26]
38	R. Lampidis	[14]
39	Chunguang Liang	[25] [26] [30]
40	María José López-Sánchez	[30]
41	Kai Löwenthal	[24]
42	Saman Majeed	[31] [34]
43	Henning Mersch	[24]
44	Ferdinand Moldenhauer	[4] [7]
45	Andres Moya	[30]
46	Martina U. Muckenthaler	[33]
47	Tobias Müller	[10] [17] [19] [21] [22] [23] [27] [28] [29] [32]
48	Patrick Musch	[20]
49	Kostas Pantopoulos	[2]
50	Tobias Penzkofer	[16]
51	Christoph Peters	[13]
52	Thomas Pfeiffer	[4] [7]
53	Birgit Pils	[22]
54	Sven Rahmann	[10]
55	Thomas Reinheckel	[13]
56	Andreas Rosenwald	[29]
57	Benjamin Ruderisch	[28]
58	Mayka Sanchez	[33]
59	R. Heiner Schirmer	[6] [20]
60	Alexander Schmid	[30]
61	Steffen Schmidt	[5] [6] [8] [14] [15]
62	Sonja Schreiber	[1] [2]
63	Jörg Schultz	[21] [22] [23] [27] [28]
64	Stefan Schuster	[3] [4] [7] [20] [26]
65	Roland Schwarz	[20] [26]
66	Knut Schwarzer	[24]
67	Philipp N. Seibel	[21] [23] [24]
68	Dietmar Seipel	[14]
69	Christian Selig	[27]
70	Vera Sonntag-Buck	[1] [2]
71	Jens Timmer	[13]
72	Yevhen Vainshtein	[33]
73	Daniel Wenzler	[13]
74	Matthias Wolf	[10] [17] [19] [21] [23] [27] [28]
75	Ke Xiao	[13]
76	Tomasz Zemojtel	[16]

Colors in the list of coauthors

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page