Youping Deng

	2009
31		Alexander Pozhikov, Mehdi Pirooznia, Rachel Ryan, Chaoyang Zhang, Ping Gong, Edward J. Perkins, Youping Deng, Marius Brouwer: Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus). BIOCOMP 2009: 174-180
30		Mehdi Pirooznia, Douglas Crawford, Jeffrey Vanwye, Russell Gibson, Chaoyang Zhang, Youping Deng, Timothy McLean: Genomic Resources for Karenia brevis. BIOCOMP 2009: 228-234
29		Jinghe Mao, Ming Shenwu, Marketta Blue, Manuel Ong, Mary Roth, Ruth Welti, Youping Deng: Plasma Lipidomic Profiling Reveals the Potential Biomarkers in Type 2 Diabetic Patients. BIOCOMP 2009: 774-779
	2008
28		Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins: A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. BIOCOMP 2008: 1040-1043
27		Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng: Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network. BIOCOMP 2008: 801-805
26		Mehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng: Creating a Workflow for Expressed Sequence Tags Analysis. BIOCOMP 2008: 806-808
25		Arun Rawat, Georg J. Seifert, Youping Deng: Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data. BMC Bioinformatics 9(S-9): (2008)
24		Mehdi Pirooznia, Tanwir Habib, Edward J. Perkins, Youping Deng: GOfetcher: a database with complex searching facility for gene ontology. Bioinformatics 24(21): 2561-2563 (2008)
	2007
23		Mehdi Pirooznia, Youping Deng: Efficiency of Hybrid Normalization of Microarray Gene Expression: A Simulation Study. AINA Workshops (1) 2007: 739-744
22		Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng: An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE 2007: 187-191
21		Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng: Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE 2007: 524-531
20		Chaoyang Zhang, Surender Dargan, Hong Lan, Youping Deng: Web-Based Information Retrieval with Local and Global Link Analyis. IKE 2007: 117-123
19		Arun Rajendran, Peng Li, Chaoyang Zhang, Youping Deng: Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization. MLMTA 2007: 31-37
18		Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S. Inouye, Kuan Yang, Edward J. Perkins, Youping Deng: Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida. BMC Bioinformatics 8(S-7): (2007)
17		Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng: Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks. BMC Bioinformatics 8(S-7): (2007)
	2006
16		Youping Deng, Yinghua Dong, Susan J. Brown, Chaoyang Zhang: An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information. APWeb Workshops 2006: 931-938
15		Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng: Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microcarray Data. IMSCCS (1) 2006: 110-115
14		Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri: Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. IMSCCS (1) 2006: 116-122
13		Vijayaraj Nagarajan, Navodit Kaushik, Beddhu Murali, Chaoyang Zhang, Sanyogita Lakhera, Mohamed O. Elasri, Youping Deng: A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity. BMC Bioinformatics 7(S-2): (2006)
12		Venkata Thodima, Mehdi Pirooznia, Youping Deng: RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. BMC Bioinformatics 7(S-2): (2006)
11		Youping Deng, Jun Ni, Chaoyang Zhang: Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06). BMC Bioinformatics 7(S-4): (2006)
10		Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri: Identification of new members of hydrophobin family using primary structure analysis. BMC Bioinformatics 7(S-4): (2006)
9		Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng, Dequan Chen: Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data. BMC Bioinformatics 7(S-4): (2006)
8		Mehdi Pirooznia, Youping Deng: SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data. BMC Bioinformatics 7(S-4): (2006)
	2005
7		Youping Deng, Venkatachalam Chokalingam, Chaoyang Zhang: Markov Chain Correlation Based Clustering of Gene Expression Data. ITCC (2) 2005: 750-755
6		Navodit Kaushik, Chaoyang Zhang, Beddhu Murali, Vijayaraj Nagarajan, Sanyogita Lakhera, Youping Deng: Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms. PDPTA 2005: 1355-
5		Judong Shen, Shing I. Chang, E. Stanley Lee, Youping Deng, Susan J. Brown: Determination of cluster number in clustering microarray data. Applied Mathematics and Computation 169(2): 1172-1185 (2005)
	2004
4		Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown: FGKA: a Fast Genetic K-means Clustering Algorithm. SAC 2004: 622-623
3		Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown: Incremental genetic K-means algorithm and its application in gene expression data analysis. BMC Bioinformatics 5: 172 (2004)
2		Hongying Jiang, Youping Deng, Huann-Sheng Chen, Lin Tao, Qiuying Sha, Jun Chen, Chung-Jui Tsai, Shuanglin Zhang: Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. BMC Bioinformatics 5: 81 (2004)
1		Qingsong Zhu, Youping Deng, Phaneendra Vanka, Susan J. Brown, Subbaratnam Muthukrishnan, Karl J. Kramer: Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. Bioinformatics 20(2): 161-169 (2004)

Coauthor Index

1	Marketta Blue	[29]
2	Marius Brouwer	[31]
3	Susan J. Brown	[1] [3] [4] [5] [16]
4	Shing I. Chang	[5]
5	Dequan Chen	[9]
6	Huann-Sheng Chen	[2]
7	Jun Chen	[2]
8	Venkatachalam Chokalingam	[7]
9	Douglas Crawford	[30]
10	Surender Dargan	[20]
11	Yinghua Dong	[16]
12	Mohamed O. Elasri	[10] [13] [14]
13	Farshad Fotouhi	[3] [4]
14	Russell Gibson	[30]
15	Ping Gong	[17] [18] [22] [26] [27] [28] [31]
16	Xin Guan	[18] [28]
17	Tanwir Habib	[24]
18	Laura S. Inouye	[18]
19	Hongying Jiang	[2]
20	Navodit Kaushik	[6] [13]
21	Karl J. Kramer	[1]
22	Sanyogita Lakhera	[6] [13]
23	Hong Lan	[20]
24	E. Stanley Lee	[5]
25	Peng Li	[9] [15] [17] [19] [27]
26	Chun Liang	[28]
27	Shiyong Lu	[3] [4]
28	Yi Lu	[3] [4]
29	Jinghe Mao	[29]
30	Timothy McLean	[30]
31	Beddhu Murali	[6] [13]
32	Subbaratnam Muthukrishnan	[1]
33	Vijayaraj Nagarajan	[6] [13]
34	Jun Ni	[11]
35	Andrzej Niemierko	[21]
36	Manuel Ong	[29]
37	Edward J. Perkins	[17] [18] [22] [24] [26] [27] [28] [31]
38	Mehdi Pirooznia	[8] [12] [18] [22] [23] [24] [26] [28] [30] [31]
39	Alexander Pozhikov	[31]
40	Arun Rajendran	[9] [15] [19]
41	Arun Rawat	[22] [25]
42	Mary Roth (Mary Tork Roth)	[29]
43	Rachel Ryan	[31]
44	Georg J. Seifert	[25]
45	Qiuying Sha	[2]
46	Judong Shen	[5]
47	Ming Shenwu	[29]
48	Lin Tao	[2]
49	Venkata Thodima	[12]
50	Chung-Jui Tsai	[2]
51	Phaneendra Vanka	[1]
52	Jeffrey Vanwye	[30]
53	J. Cristobal Vera	[28]
54	Ruth Welti	[29]
55	Jack Y. Yang	[21] [22]
56	Kuan Yang	[10] [14] [18]
57	Mary Qu Yang	[21] [22]
58	Chaoyang Zhang	[6] [7] [9] [10] [11] [13] [14] [15] [16] [17] [19] [20] [26] [27] [28] [30] [31]
59	Shuanglin Zhang	[2]
60	Qingsong Zhu	[1]

Colors in the list of coauthors