 | 2008 |
|---|
| 71 |       | Ivelin Georgiev,
Daniel Keedy,
Jane S. Richardson,
David C. Richardson,
Bruce Randall Donald:
Algorithm for backrub motions in protein design.
ISMB 2008: 196-204 |
| 70 | | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.
Journal of Computational Chemistry 29(10): 1527-1542 (2008) |
| 2007 |
|---|
| 69 | | Ivelin Georgiev,
Bruce Randall Donald:
Dead-End Elimination with Backbone Flexibility.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 185-194 |
| 2006 |
|---|
| 68 | | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
ISMB (Supplement of Bioinformatics) 2006: 174-183 |
| 67 | | Ivelin Georgiev,
Ryan H. Lilien,
Bruce Randall Donald:
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles.
RECOMB 2006: 530-545 |
| 66 | | Shobha Potluri,
Anthony K. Yan,
James J. Chou,
Bruce Randall Donald,
Chris Bailey-Kellogg:
Extended Abstract: Structure Determination of Symmetric Protein Complexes by a Complete Search of Symmetry Configuration Space Using NMR Distance Restraints.
WAFR 2006: 335-340 |
| 65 | | Lincong Wang,
Ramgopal R. Mettu,
Bruce Randall Donald:
A Polynomial-Time Algorithm for De Novo Protein Backbone Structure Determination from Nuclear Magnetic Resonance Data.
Journal of Computational Biology 13(7): 1267-1288 (2006) |
| 2005 |
|---|
| 64 | | Lincong Wang,
Bruce Randall Donald:
An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings.
CSB 2005: 189-202 |
| 63 | | Lincong Wang,
Ramgopal R. Mettu,
Bruce Randall Donald:
An Algebraic Geometry Approach to Protein Structure Determination from NMR Data.
CSB 2005: 235-246 |
| 62 | | Ramgopal R. Mettu,
Ryan H. Lilien,
Bruce Randall Donald:
High-throughput inference of protein-protein interfaces from unassigned NMR data.
ISMB (Supplement of Bioinformatics) 2005: 292-301 |
| 61 | | Bruce Randall Donald,
Christopher G. Levey,
Craig D. McGray,
Igor Paprotny,
Daniela Rus:
A Steerable, Untethered, 250 × 60µm MEMS Mobile Micro-Robot.
ISRR 2005: 337-356 |
| 60 | | Bruce Randall Donald:
Computational and physical modeling challenges in structural molecular biology and proteomics.
Symposium on Solid and Physical Modeling 2005: 7 |
| 59 | | Anthony K. Yan,
Christopher James Langmead,
Bruce Randall Donald:
A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology.
I. J. Robotic Res. 24(2-3): 165-182 (2005) |
| 58 | | Ryan H. Lilien,
Brian W. Stevens,
Amy C. Anderson,
Bruce Randall Donald:
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme.
Journal of Computational Biology 12(6): 740-761 (2005) |
| 2004 |
|---|
| 57 | | Christopher James Langmead,
Bruce Randall Donald:
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment.
CSB 2004: 278-289 |
| 56 | | Lincong Wang,
Bruce Randall Donald:
Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings.
CSB 2004: 319-330 |
| 55 | | Ryan H. Lilien,
Brian W. Stevens,
Amy C. Anderson,
Bruce Randall Donald:
A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.
RECOMB 2004: 46-57 |
| 54 | | Christopher James Langmead,
Anthony K. Yan,
Ryan H. Lilien,
Lincong Wang,
Bruce Randall Donald:
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
Journal of Computational Biology 11(2/3): 277-298 (2004) |
| 2003 |
|---|
| 53 | | Christopher James Langmead,
Bruce Randall Donald:
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings.
CSB 2003: 209-219 |
| 52 | | Lincong Wang,
Ramgopal R. Mettu,
Ryan H. Lilien,
Bruce Randall Donald:
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings.
CSB 2003: 611-612 |
| 51 | | Bruce Randall Donald,
Christopher G. Levey,
Craig D. McGray,
Daniela Rus,
Mike Sinclair:
UntetheredMicro-Actuators for Autonomous Micro-robot Locomotion: Design, Fabrication, Control, and Performance.
ISRR 2003: 502-516 |
| 50 | | Christopher James Langmead,
Anthony K. Yan,
Ryan H. Lilien,
Lincong Wang,
Bruce Randall Donald:
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
RECOMB 2003: 176-187 |
| 49 | | Christopher James Langmead,
Anthony K. Yan,
C. Robertson McClung,
Bruce Randall Donald:
Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns.
Journal of Computational Biology 10(3/4): 521-536 (2003) |
| 48 | | Ryan H. Lilien,
Hany Farid,
Bruce Randall Donald:
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum.
Journal of Computational Biology 10(6): 925-946 (2003) |
| 2002 |
|---|
| 47 | | Christopher James Langmead,
C. Robertson McClung,
Bruce Randall Donald:
A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns.
CSB 2002: 237-245 |
| 46 | | Christopher James Langmead,
Anthony K. Yan,
C. Robertson McClung,
Bruce Randall Donald:
Phase-independent rhythmic analysis of genome-wide expression patterns.
RECOMB 2002: 205-215 |
| 45 |  | Bruce Randall Donald,
Kevin M. Lynch,
Daniela Rus:
Guest Editors' Introduction to the Special Issue on Algorithmic Foundations of Robotics.
I. J. Robotic Res. 21(3): 177-178 (2002) |
| 2001 |
|---|
| 44 | | Bruce Randall Donald,
Christopher Bailey-Kellogg,
Jack Kelley,
Ryan H. Lilien:
Physical Geometric Algorithms for Structural Molecular Biology.
ICRA 2001: 940-947 |
| 43 | | Christopher James Langmead,
Bruce Randall Donald:
Extracting structural information using time-frequency analysis of protein NMR data.
RECOMB 2001: 164-175 |
| 42 | | Christopher Bailey-Kellogg,
John J. Kelley,
Clifford Stein,
Bruce Randall Donald:
Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling.
Journal of Computational Biology 8(1): 19-36 (2001) |
| 2000 |
|---|
| 41 | | John W. Suh,
R. Bruce Darling,
Karl-Friedrich Böhringer,
Bruce Randall Donald,
Henry Baltes,
Gregory T. A. Kovacs:
Fully Programmable MEMS Ciliary Actuator Arrays for Micromanipulation Tasks.
ICRA 2000: 1101-1108 |
| 40 | | Bruce Randall Donald,
Frederick Henle:
Using Haptic Vector Fields for Animation Motion Control.
ICRA 2000: 3435-3442 |
| 39 | | Jon Howell,
Bruce Randall Donald:
Practical Mobile Robot Self-Localization.
ICRA 2000: 3485-3492 |
| 38 | | Bruce Randall Donald,
Larry Gariepy,
Daniela Rus:
Distributed Manipulation of Multiple Objects using Ropes.
ICRA 2000: 450-457 |
| 37 | | Christopher Bailey-Kellogg,
John J. Kelley,
Clifford Stein,
Bruce Randall Donald:
Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling.
ISMB 2000: 13-24 |
| 36 | | Christopher Bailey-Kellogg,
Alik Widge,
John J. Kelley,
Marcelo J. Berardi,
John H. Bushweller,
Bruce Randall Donald:
The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data.
RECOMB 2000: 33-44 |
| 35 | | Tom Ngo,
Doug Cutrell,
Jenny Dana,
Bruce Randall Donald,
Lorie Loeb,
Shunhui Zhu:
Accessible animation and customizable graphics via simplicial configuration modeling.
SIGGRAPH 2000: 403-410 |
| 34 | | Amy J. Briggs,
Bruce Randall Donald:
Visibility-Based Planning of Sensor Control Strategies.
Algorithmica 26(3-4): 364-388 (2000) |
| 33 | | Karl-Friedrich Böhringer,
Vivek Bhatt,
Bruce Randall Donald,
Kenneth Y. Goldberg:
Algorithms for Sensorless Manipulation Using a Vibrating Surface.
Algorithmica 26(3-4): 389-429 (2000) |
| 32 | | R. G. Brown,
Bruce Randall Donald:
Mobile Robot Self-Localization without Explicit Landmarks.
Algorithmica 26(3-4): 515-559 (2000) |
| 1999 |
|---|
| 31 | | Bruce Randall Donald,
Larry Gariepy,
Daniela Rus:
Experiments in Constrained Prehensile Manipulation: Distributed Manipulation with Ropes.
ISER 1999: 25-36 |
| 30 | | Karl-Friedrich Böhringer,
Bruce Randall Donald,
Dan Halperin:
On the Area Bisectors of a Polygon.
Discrete & Computational Geometry 22(2): 269-285 (1999) |
| 29 | | Karl-Friedrich Böhringer,
Bruce Randall Donald,
Noel C. MacDonald:
Programmable Force Fields for Distributed Manipulation, with Applications to MEMS Actuator Arrays and Vibratory Parts Feeders.
I. J. Robotic Res. 18(2): 168-200 (1999) |
| 1997 |
|---|
| 28 | | Karl-Friedrich Böhringer,
Bruce Randall Donald,
Dan Halperin:
The Area Bisectors of a Polygon and Force Equilibria in Programmable Vector Fields.
Symposium on Computational Geometry 1997: 457-459 |
| 27 | | Bruce Randall Donald,
James Jennings,
Daniela Rus:
Information Invariants for Distributed Manipulation.
I. J. Robotic Res. 16(5): 673-702 (1997) |
| 26 | | Bruce Randall Donald,
James Jennings,
Daniela Rus:
Minimalism Distribution Supermodularity.
J. Exp. Theor. Artif. Intell. 9(2-3): 293-321 (1997) |
| 1995 |
|---|
| 25 | | Karl-Friedrich Böhringer,
Russell Brown,
Bruce Randall Donald,
James Jennings,
Daniela Rus:
Distributed Robotic Manipulation: Experiments in Minimalism.
ISER 1995: 11-25 |
| 24 | | Bruce Randall Donald,
Patrick G. Xavier:
Provably Good Approximation Algorithms for Optimal Kinodynamic Planning: Robots with Decoupled Dynamics Bounds.
Algorithmica 14(6): 443-479 (1995) |
| 23 | | Bruce Randall Donald,
Patrick G. Xavier:
Provably Good Approximation Algorithms for Optimal Kinodynamic Planning for Cartesian Robots and Open-Chain Manipulators.
Algorithmica 14(6): 480-530 (1995) |
| 22 | | Bruce Randall Donald:
On Information Invariants in Robotics.
Artif. Intell. 72(1-2): 217-304 (1995) |
| 1994 |
|---|
| 21 | | Amy J. Briggs,
Bruce Randall Donald:
Automatic Sensor Configuration for Task-Directed Planning.
ICRA 1994: 1345-1350 |
| 20 | | Bruce Randall Donald,
James Jennings,
Daniela Rus:
Analyzing Teams of Cooperating Mobile Robots.
ICRA 1994: 1896-1903 |
| 19 | | Karl-Friedrich Böhringer,
Bruce Randall Donald,
Robert Mihailovich,
Noel C. MacDonald:
Sensorless Manipulation Using Massively Parallel Microfabricated Actuator Arrays.
ICRA 1994: 826-833 |
| 1993 |
|---|
| 18 | | Bruce Randall Donald:
Information Invariants in Robotics: Part I - State, Communication, and Side-Effects.
ICRA (3) 1993: 276-283 |
| 17 | | Bruce Randall Donald:
Information Invariants in Robotics: Part II - Sensors and Computation.
ICRA (3) 1993: 284-290 |
| 16 | | Bruce Randall Donald:
Special Issue on Computational Robotics: The Geometric Theory of Manipulation, Planning, and Control.
Algorithmica 10(2-4): 91-101 (1993) |
| 15 | | Bruce Randall Donald,
Patrick G. Xavier,
John F. Canny,
John H. Reif:
Kinodynamic Motion Planning.
J. ACM 40(5): 1048-1066 (1993) |
| 1992 |
|---|
| 14 | | John F. Canny,
Bruce Randall Donald,
Eugene K. Ressler:
A Rational Rotation Method for Robust Geometric Algorithms.
Symposium on Computational Geometry 1992: 251-260 |
| 13 | | Bruce Randall Donald,
James Jennings,
Russell Brown:
Constructive recognizability for task-directed robot programming.
Robotics and Autonomous Systems 9(1-2): 41-74 (1992) |
| 1991 |
|---|
| 12 | | Bruce Randall Donald,
Davied Renpan Chang:
On the Complexity of Computing the Homology Type of a Triangulation
FOCS 1991: 650-661 |
| 1990 |
|---|
| 11 | | Jed Lengyel,
Mark Reichert,
Bruce Randall Donald,
Donald P. Greenberg:
Real-time robot motion planning using rasterizing computer graphics hardware.
SIGGRAPH 1990: 327-335 |
| 10 | | Bruce Randall Donald,
Patrick G. Xavier:
Provably Good Approximation Algorithms for Optimal Kinodynamic Planning for Cartesian Robots and Open Chain Manipulators.
Symposium on Computational Geometry 1990: 290-300 |
| 9 | | Bruce Randall Donald:
The Complexity of Planar Compliant Motion Planning Under Uncertainty.
Algorithmica 5(3): 353-382 (1990) |
| 8 | | Bruce Randall Donald:
Planning Multi-Step Error Detection and Recovery Strategies.
I. J. Robotic Res. 9(1): 3-60 (1990) |
| 1989 |
|---|
| 7 | | Bruce Randall Donald:
Error Detection and Recovery in Robotics
Springer 1989 |
| 1988 |
|---|
| 6 | | John F. Canny,
Bruce Randall Donald,
John H. Reif,
Patrick G. Xavier:
On the Complexity of Kinodynamic Planning
FOCS 1988: 306-316 |
| 5 | | Bruce Randall Donald:
The Complexity of Planar Compliant Motion Planning Under Uncertainty.
Symposium on Computational Geometry 1988: 309-318 |
| 4 | | Bruce Randall Donald:
A Geometric Approach to Error Detection and Recovery for Robot Motion Planning with Uncertainty.
Artif. Intell. 37(1-3): 223-271 (1988) |
| 3 | | John F. Canny,
Bruce Randall Donald:
Simplified Voronoi Diagrams.
Discrete & Computational Geometry 3: 219-236 (1988) |
| 1987 |
|---|
| 2 | | John F. Canny,
Bruce Randall Donald:
Simplified Voronoi Diagrams.
Symposium on Computational Geometry 1987: 153-161 |
| 1 | | Bruce Randall Donald:
A Search Algorithm for Motion Planning with Six Degrees of Freedom.
Artif. Intell. 31(3): 295-353 (1987) |
