Thomas A. Down

Thomas Down

	2008
17		Andrew M. Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert D. Finn, Henning Hermjakob, Tim J. P. Hubbard, Rafael C. Jimenez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José R. Macías, Gabrielle A. Reeves, Andreas Prlic: Integrating biological data - the Distributed Annotation System. BMC Bioinformatics 9(S-8): (2008)
16		Mutlu Dogruel, Thomas A. Down, Tim J. P. Hubbard: NestedMICA as an ab initio protein motif discovery tool. BMC Bioinformatics 9: (2008)
15		Richard C. G. Holland, Thomas A. Down, Matthew R. Pocock, Andreas Prlic, David Huen, Keith James, Sylvain Foisy, Andreas Dräger, Andy Yates, Michael Heuer, Mark J. Schreiber: BioJava: an open-source framework for bioinformatics. Bioinformatics 24(18): 2096-2097 (2008)
14		Paul Flicek, B. L. Aken, Kathryn Beal, Benoit Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Fiona Cunningham, Tim Cutts, Thomas A. Down, S. C. Dyer, T. Eyre, S. Fitzgerald, J. Fernandez-Banet, Stefan Gräf, Syed Haider, Martin Hammond, Richard C. G. Holland, Kevin L. Howe, K. Howe, N. Johnson, Andrew M. Jenkinson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, I. Longden, Karine Megy, Patrick Meidl, B. Overduin, A. Parker, B. Pritchard, Andreas Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, Guy Slater, Damian Smedley, G. Spudich, S. Trevanion, Albert J. Vilella, J. Vogel, S. White, M. Wood, Ewan Birney, Tony Cox, Val Curwen, Richard Durbin, X. M. Fernandez-Suarez, Javier Herrero, Tim J. P. Hubbard, Arek Kasprzyk, Glenn Proctor, James Smith, Abel Ureta-Vidal, Stephen M. J. Searle: Ensembl 2008. Nucleic Acids Research 36(Database-Issue): 707-714 (2008)
	2007
13		Andreas Prlic, Thomas A. Down, Eugene Kulesha, Robert D. Finn, Andreas Kähäri, Tim J. P. Hubbard: Integrating sequence and structural biology with DAS. BMC Bioinformatics 8: (2007)
12		Tim J. P. Hubbard, B. L. Aken, Kathryn Beal, Benoit Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Fiona Cunningham, Tim Cutts, Thomas Down, S. C. Dyer, S. Fitzgerald, J. Fernandez-Banet, Stefan Gräf, Syed Haider, Martin Hammond, Javier Herrero, Richard C. G. Holland, Kevin L. Howe, K. Howe, N. Johnson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, I. Longden, Craig Melsopp, Karine Megy, Patrick Meidl, B. Overduin, A. Parker, Andreas Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, J. Severin, Guy Slater, Damian Smedley, G. Spudich, S. Trevanion, Albert J. Vilella, J. Vogel, S. White, M. Wood, Tony Cox, Val Curwen, Richard Durbin, X. M. Fernandez-Suarez, Paul Flicek, Arek Kasprzyk, Glenn Proctor, Stephen M. J. Searle, James Smith, Abel Ureta-Vidal, Ewan Birney: Ensembl 2007. Nucleic Acids Research 35(Database-Issue): 610-617 (2007)
	2006
11		Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Down, Robert D. Finn, Stefan Gräf, David K. Jackson, Andreas Kähäri, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim J. P. Hubbard: The Distributed Annotation System for Integration of Biological Data. DILS 2006: 195-203
10		Thomas Down, Bernard Leong, Tim J. P. Hubbard: A machine learning strategy to identify candidate binding sites in human protein-coding sequence. BMC Bioinformatics 7: 419 (2006)
9		Ewan Birney, T. Daniel Andrews, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, X. M. Fernandez-Suarez, Paul Flicek, Stefan Gräf, Martin Hammond, Javier Herrero, Kevin L. Howe, V. Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Felix Kokocinski, Eugene Kulesha, D. London, I. Longden, Craig Melsopp, Patrick Meidl, B. Overduin, A. Parker, Glenn Proctor, Andreas Prlic, Mark Rae, D. Rios, Seth Redmond, M. Schuster, I. Sealy, Stephen M. J. Searle, J. Severin, Guy Slater, Damian Smedley, James Smith, Arne Stabenau, Jim Stalker, S. Trevanion, Abel Ureta-Vidal, J. Vogel, S. White, Cara Woodwark, Tim J. P. Hubbard: Ensembl 2006. Nucleic Acids Research 34(Database-Issue): 556-561 (2006)
	2005
8		Andreas Prlic, Thomas A. Down, Tim J. P. Hubbard: Adding Some SPICE to DAS. ECCB/JBI 2005: 41
7		Philip Jones, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler: Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics 21(14): 3198-3199 (2005)
6		Tim J. P. Hubbard, D. Andrews, Mario Cáccamo, Graham Cameron, Yuan Chen, Michele E. Clamp, Laura Clarke, G. Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, X. M. Fernandez-Suarez, James Gilbert, Martin Hammond, Javier Herrero, H. Hotz, Kevin L. Howe, V. Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, S. Keenan, Felix Kokocinski, D. London, I. Longden, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Simon C. Potter, Glenn Proctor, Mark Rae, D. Rios, M. Schuster, Stephen M. J. Searle, J. Severin, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, S. Trevanion, Abel Ureta-Vidal, J. Vogel, S. White, Cara Woodwark, Ewan Birney: Ensembl 2005. Nucleic Acids Research 33(Database-Issue): 447-453 (2005)
	2004
5		Thomas A. Down, Tim J. P. Hubbard: What can we learn from noncoding regions of similarity between genomes? BMC Bioinformatics 5: 131 (2004)
4		Ewan Birney, T. Daniel Andrews, Paul Bevan, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke, G. Coates, Tony Cox, James A. Cuff, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, Eduardo Eyras, X. M. Fernandez-Suarez, P. Gane, B. Gibbins, James Gilbert, Martin Hammond, H. Hotz, V. Iyer, Andreas Kähäri, K. Jekosch, Arek Kasprzyk, Damian Keefe, S. Keenan, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard: Ensembl 2004. Nucleic Acids Research 32(Database-Issue): 468-470 (2004)
	2003
3		Diego di Bernardo, Thomas Down, Tim J. P. Hubbard: ddbRNA: detection of conserved secondary structures in multiple alignments. Bioinformatics 19(13): 1606-1611 (2003)
2		Michele E. Clamp, T. Daniel Andrews, Daniel Barker, Paul Bevan, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Tim J. P. Hubbard, Arek Kasprzyk, Damian Keefe, Heikki Lehväslaiho, V. Iyer, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Ewan Birney: Ensembl 2002: accommodating comparative genomics. Nucleic Acids Research 31(1): 38-42 (2003)
	2002
1		Tim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp: The Ensembl genome database project. Nucleic Acids Research 30(1): 38-41 (2002)

Coauthor Index

1	B. L. Aken	[12] [14]
2	Mario Albrecht	[17]
3	D. Andrews	[6]
4	T. Daniel Andrews	[2] [4] [9]
5	Rolf Apweiler	[7]
6	Benoit Ballester	[12] [14]
7	Daniel Barker	[1] [2]
8	Kathryn Beal	[12] [14]
9	Diego di Bernardo	[3]
10	Paul Bevan	[2] [4]
11	Ewan Birney	[1] [2] [4] [6] [9] [11] [12] [14] [17]
12	Hagen Blankenburg	[17]
13	Mario Cáccamo	[4] [6] [9] [12] [14]
14	Graham Cameron	[1] [2] [4] [6]
15	Yuan Chen	[1] [2] [4] [6] [9] [12] [14]
16	Michele E. Clamp	[1] [2] [4] [6]
17	Laura Clarke	[1] [2] [4] [6] [9] [12] [14]
18	G. Coates	[4] [6] [9] [12] [14]
19	Antony Cox (Tony Cox)	[1] [2] [4] [6] [9] [11] [12] [14]
20	James A. Cuff	[1] [2] [4]
21	Fiona Cunningham	[6] [9] [12] [14]
22	Val Curwen	[1] [2] [4] [6] [9] [12] [14]
23	Tim Cutts	[4] [6] [9] [12] [14]
24	Mutlu Dogruel	[16]
25	Andreas Dräger	[15]
26	Richard Durbin	[1] [2] [4] [6] [9] [12] [14]
27	S. C. Dyer	[12] [14]
28	Eduardo Eyras	[1] [2] [4]
29	T. Eyre	[14]
30	J. Fernandez-Banet	[12] [14]
31	X. M. Fernandez-Suarez	[4] [6] [9] [12] [14]
32	Robert D. Finn	[11] [13] [17]
33	S. Fitzgerald	[12] [14]
34	Paul Flicek	[9] [12] [14]
35	Sylvain Foisy	[15]
36	P. Gane	[4]
37	B. Gibbins	[4]
38	James Gilbert	[1] [2] [4] [6]
39	Stefan Gräf	[9] [11] [12] [14]
40	Andre Hackmann	[7]
41	Syed Haider	[12] [14]
42	Martin Hammond	[1] [2] [4] [6] [9] [12] [14]
43	Henning Hermjakob	[7] [17]
44	Javier Herrero	[6] [9] [12] [14]
45	Michael Heuer	[15]
46	Richard C. G. Holland	[12] [14] [15]
47	H. Hotz	[4] [6]
48	K. Howe	[12] [14]
49	Kevin L. Howe	[6] [9] [12] [14]
50	Tim J. P. Hubbard	[1] [2] [3] [4] [5] [6] [8] [9] [10] [11] [12] [13] [14] [16] [17]
51	David Huen	[15]
52	Lukasz Huminiecki	[1]
53	V. Iyer	[2] [4] [6] [9]
54	David K. Jackson	[11]
55	Keith James	[15]
56	K. Jekosch	[4] [6] [9]
57	Andrew M. Jenkinson	[14] [17]
58	Rafael C. Jimenez	[17]
59	N. Johnson	[12] [14]
60	Philip Jones	[7] [17]
61	Andreas Kähäri	[4] [6] [7] [9] [11] [12] [13] [14] [17]
62	Arek Kasprzyk	[1] [2] [4] [6] [9] [12] [14]
63	Damian Keefe	[2] [4] [6] [9] [12] [14]
64	S. Keenan	[4] [6]
65	Felix Kokocinski	[6] [9] [12] [14]
66	Ernst Kretschmann	[7]
67	Eugene Kulesha	[9] [11] [12] [13] [14] [17]
68	Daniel Lawson	[12] [14]
69	Heikki Lehväslaiho	[1] [2] [4]
70	Bernard Leong	[10]
71	Philip Lijnzaad	[1]
72	D. London	[6] [9]
73	I. Longden	[6] [9] [12] [14]
74	José R. Macías	[17]
75	Graham P. McVicker	[4] [6]
76	Karine Megy	[12] [14]
77	Patrick Meidl	[4] [6] [9] [12] [14]
78	Craig Melsopp	[1] [2] [4] [6] [9] [12]
79	Emmanuel Mongin	[1] [2] [4]
80	B. Overduin	[9] [12] [14]
81	A. Parker	[9] [12] [14]
82	Roger Pettett	[1] [2] [4] [11]
83	Matthew R. Pocock	[1] [15]
84	Simon C. Potter	[1] [2] [4] [6]
85	B. Pritchard	[14]
86	Andreas Prlic	[8] [9] [11] [12] [13] [14] [15] [17]
87	Glenn Proctor	[4] [6] [9] [12] [14]
88	Antony F. Quinn	[7]
89	Mark Rae	[4] [6] [9]
90	Seth Redmond	[9]
91	Gabrielle A. Reeves	[17]
92	S. Rice	[12] [14]
93	D. Rios	[6] [9] [12] [14]
94	Alastair Rust	[1] [2]
95	Esther Schmidt	[1] [2]
96	Mark J. Schreiber	[15]
97	M. Schuster	[6] [9] [12] [14]
98	I. Sealy	[9] [12] [14]
99	Stephen M. J. Searle	[1] [2] [4] [6] [9] [12] [14]
100	J. Severin	[6] [9] [12]
101	Guy Slater	[1] [2] [4] [6] [9] [12] [14]
102	Damian Smedley	[4] [6] [9] [12] [14]
103	James Smith	[1] [2] [4] [6] [9] [11] [12] [14]
104	William Spooner	[1] [2] [4] [6]
105	G. Spudich	[12] [14]
106	Arne Stabenau	[1] [2] [4] [6] [9]
107	Jim Stalker	[1] [2] [4] [6] [9] [11]
108	R. Storey	[4] [6]
109	Elia Stupka	[1] [2]
110	S. Trevanion	[6] [9] [12] [14]
111	Abel Ureta-Vidal	[1] [2] [4] [6] [9] [12] [14]
112	Imre Vastrik	[1] [2]
113	Albert J. Vilella	[12] [14]
114	Nisha Vinod	[7]
115	J. Vogel	[6] [9] [12] [14]
116	S. White	[6] [9] [12] [14]
117	Daniela Wieser	[7]
118	M. Wood	[12] [14]
119	Cara Woodwark	[4] [6] [9]
120	Andy Yates	[15]