Roland Eils

	2009
54		William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr: Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images. Bildverarbeitung für die Medizin 2009: 207-211
53		Nora Rieber, Bettina Knapp, Roland Eils, Lars Kaderali: RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens. Bioinformatics 25(5): 678-679 (2009)
	2008
52		William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr: Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences. Bildverarbeitung für die Medizin 2008: 448-452
51		Petr Matula, Anil Kumar, Ilka Wörz, Nathalie Harder, Holger Erfle, Ralf Bartenschlager, Roland Eils, Karl Rohr: Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy. Bildverarbeitung für die Medizin 2008: 453-457
50		William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr: Probabilistic tracking of virus particles in fluorescence microscopy images. ISBI 2008: 272-275
49		Jan T. Kim, Roland Eils: Systems Biology and Artificial Life: Towards Predictive Modeling of Biological Systems. Artificial Life 14(1): 1-2 (2008)
48		Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr: Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei. IEEE Transactions on Image Processing 17(4): 493-499 (2008)
	2007
47		Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils: Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei. BIRD 2007: 104-118
46		Evgeny Gladilin, Karl Rohr, Roland Eils: On Validation of Non-physical Techniques for Elastic Image Registration. Bildverarbeitung für die Medizin 2007: 111-115
45		Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Constantin Kappel, Roland Eils, Karl Rohr: Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells. Bildverarbeitung für die Medizin 2007: 16-20
44		Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr: Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. Bildverarbeitung für die Medizin 2007: 242-246
43		William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr: Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences. Bildverarbeitung für die Medizin 2007: 6-10
42		Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils: Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei. CIBCB 2007: 127-134
41		Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr: Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory. DAGM-Symposium 2007: 497-506
40		Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr: Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. ISBI 2007: 1044-1047
39		Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Yi-Chun Chen, David Spector, Constantin Kappel, Roland Eils, Karl Rohr: Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells. ISBI 2007: 1328-1331
38		William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr: Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences. ISBI 2007: 256-259
37		Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König: Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli. LWA 2007: 55-60
36		Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr: Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory. MDA 2007: 37-46
35		Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer König: Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli. BMC Bioinformatics 8: (2007)
	2006
34		Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Roland Eils, Karl Rohr: Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei. Bildverarbeitung für die Medizin 2006: 364-368
33		Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr: Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells. Bildverarbeitung für die Medizin 2006: 374-378
32		Evgeny Gladilin, Roland Eils, Karl Rohr: 3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen Kugelabbildung. Bildverarbeitung für die Medizin 2006: 384-388
31		Vassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr: Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens. CVPR (1) 2006: 276-283
30		Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr: Automated recognition of mitotic patterns in fluorescence microscopy images of human cells. ISBI 2006: 1016-1019
29		Julian Mattes, Janna Nawroth, Petra Boukamp, Roland Eils, Karin M. Greulich-Bode: Analyzing motion and deformation of the cell nucleus for studying co-localizations of nuclear structures. ISBI 2006: 1044-1047
28		Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König: Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms. LWA 2006: 350-355
27		Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr: Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences. MICCAI (1) 2006: 840-848
26		Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr: Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei. MICCAI (1) 2006: 907-914
25		Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils: Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. BMC Bioinformatics 7: 119 (2006)
24		Arunachalam Vinayagam, Coral del Val, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai, Rainer König: GOPET: A tool for automated predictions of Gene Ontology terms. BMC Bioinformatics 7: 161 (2006)
23		Alla Bulashevska, Roland Eils: Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains. BMC Bioinformatics 7: 298 (2006)
22		Theodora Manoli, Norbert Gretz, Hermann-Josef Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors: Group testing for pathway analysis improves comparability of different microarray datasets. Bioinformatics 22(20): 2500-2506 (2006)
21		Markus Ulrich, Constantin Kappel, Joël Beaudouin, Stefan Hezel, Jochen Ulrich, Roland Eils: Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images. Bioinformatics 22(21): 2709-2710 (2006)
20		Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors: Argonaute - a database for gene regulation by mammalian microRNAs. Nucleic Acids Research 34(Database-Issue): 115-118 (2006)
19		Roland Eils, Leo Neumann: Systems Biology and Information Technology (Systembiologie und Informationstechnologie. it - Information Technology 48(3): 131-132 (2006)
18		Ivayla Vacheva, Roland Eils: Computational Systems Biology Platforms (Computergestützte Systembiologieplattformen). it - Information Technology 48(3): 140-147 (2006)
	2005
17		Falk Schubert, Bernhard Tausch, Stefan Joos, Roland Eils: CGH-Profiler: Data mining based on genomic aberration profiles. BMC Bioinformatics 6: 188 (2005)
16		Patrick Warnat, Roland Eils, Benedikt Brors: Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinformatics 6: 265 (2005)
15		Svetlana Bulashevska, Roland Eils: Inferring genetic regulatory logic from expression data. Bioinformatics 21(11): 2706-2713 (2005)
	2004
14		Dietmar Volz, Martin Eigel, Chaitanya Athale, Peter Bastian, Harald Hermann, Constantin Kappel, Roland Eils: Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells. CMSB 2004: 161-171
13		Martin Bentele, Roland Eils: General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells. CMSB 2004: 248-251
12		Juntao Gao, Roland Eils, Daniela Köhler, Irina Solovei, Thomas Cremer, Julian Mattes: Assessing The Similarity of Spatial Configurations Using Distance Differences and Bending Energy: Application To Chromosomal Interphase Arrangements In HeLa Cell Clones. ISBI 2004: 1400-1403
11		Arunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai: Applying Support Vector Machines for Gene ontology based gene function prediction. BMC Bioinformatics 5: 116 (2004)
10		Rainer König, Roland Eils: Gene expression analysis on biochemical networks using the Potts spin model. Bioinformatics 20(10): 1500-1505 (2004)
	2003
9		Falk Schubert, Jasmin Müller, Björn Fritz, Peter Lichter, Roland Eils: Understanding the classification of tumors with a support-vector-machine: A case-based explanation scheme. German Conference on Bioinformatics 2003: 123-127
8		Rainer König, Roland Eils: Gene expression analysis on biochemical networks with the potts spin model. German Conference on Bioinformatics 2003: 69-72
	2002
7		Marco Weismueller, Rainer König, Roland Eils: Modelling of Information Flows in Cells. ESM 2002: 413-417
6		Roland Eils: Machine Learning Approaches for Deciphering Complex Pathomechanisms in Cancer. GI Jahrestagung (Ergänzungsband) 2002: 63-64
	2001
5		Johannes Fieres, Julian Mattes, Roland Eils: A Point Set Registration Algorithm Using a Motion Model Based on Thin-Plate Splines and Point Clustering. DAGM-Symposium 2001: 76-83
4		Julian Mattes, Johannes Fieres, Joël Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils: New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis. MICCAI 2001: 1323-1325
3		Matthias Gebhard, Julian Mattes, Roland Eils: An Active Contour Model for Segmentation Based on Cubic B-splines and Gradient Vector Flow. MICCAI 2001: 1373-1375
	1996
2		Harald Bornfleth, Daniele Zink, Kurt Sätzler, Roland Eils, Christoph Cremer: Modellgestützte Segmentierung von Replikationsdomänen in dreidimensionalen konfokalen Mikroskopiebildern. DAGM-Symposium 1996: 408-419
1		Kurt Sätzler, Cornelius Cremer, Roland Eils: 3D-Bildfolgen zur Auflösungsverbesserung in der Fluoreszenzmikroskopie. DAGM-Symposium 1996: 92-105

Coauthor Index

1	Chaitanya Athale	[14]
2	Patricia Le Baccon	[26] [39] [45] [48]
3	Ralf Bartenschlager	[51]
4	Peter Bastian	[14]
5	Joël Beaudouin	[4] [21]
6	Martin Bentele	[13]
7	Andreas Bohne-Lang	[20]
8	Harald Bornfleth	[2]
9	Petra Boukamp	[29]
10	Benedikt Brors	[16] [20] [22]
11	Alla Bulashevska	[23]
12	Svetlana Bulashevska	[15]
13	Yi-Chun Chen	[39]
14	Christoph Cremer	[2]
15	Cornelius Cremer	[1]
16	Thomas Cremer	[12] [26] [34] [48]
17	Roel van Driel	[36] [41] [42] [47]
18	Martin Eigel	[14]
19	Jan Ellenberg	[4] [27] [30] [31] [33] [40] [44]
20	Holger Erfle	[30] [31] [33] [51]
21	Johannes Fieres	[4] [5]
22	Björn Fritz	[9]
23	Juntao Gao	[12]
24	Matthias Gebhard	[3]
25	Daniel Gerlich	[4]
26	Evgeny Gladilin	[32] [42] [46] [47]
27	Karl-Heinz Glatting	[11] [24]
28	William J. Godinez	[27] [38] [40] [43] [44] [50] [52] [54]
29	Sandra Götze	[36] [41] [42] [47]
30	Norbert Gretz	[20] [22]
31	Karin M. Greulich-Bode	[29]
32	Hermann-Josef Gröne	[20] [22]
33	Nathalie Harder	[27] [30] [31] [33] [40] [44] [51]
34	Edith Heard	[26] [39] [45] [48]
35	Michael Held	[30] [31] [33]
36	Harald Hermann	[14]
37	Stefan Hezel	[21]
38	Stefan Joos	[17]
39	Lars Kaderali	[53]
40	Constantin Kappel	[14] [21] [39] [45]
41	Marc Kenzelmann	[20] [22]
42	Il-Han Kim	[39] [45]
43	Jan T. Kim	[49]
44	Bettina Knapp	[53]
45	Daniela Köhler	[12] [26] [34] [48]
46	Rainer König	[7] [8] [10] [11] [24] [25] [28] [35] [37]
47	Vassili Kovalev	[31]
48	Stefan Küffer	[20]
49	Anil Kumar	[51]
50	Marko Lampe	[38] [43] [50] [52] [54]
51	Peter Lichter	[9]
52	Urban Liebel	[30] [31] [33]
53	Serguei Loukianiouk	[20]
54	Sabine Maertens	[20]
55	Theodora Manoli	[22]
56	Jose Mateos-Langerak	[42] [47]
57	Julio Mateos-Langerak	[36] [41]
58	Julian Mattes	[3] [4] [5] [12] [29]
59	Petr Matula	[51]
60	Jutta Moormann	[11]
61	Felipe Mora-Bermúdez	[27] [40] [44]
62	Barbara Müller	[38] [43] [50] [52] [54]
63	Jasmin Müller	[9]
64	Janna Nawroth	[29]
65	Beate Neumann	[30] [31] [33]
66	Leo Neumann	[19]
67	Marcus Oswald	[25] [28] [37]
68	Kitiporn Plaimas	[37]
69	Gerhard Reinelt	[25] [28]
70	Nora Rieber	[53]
71	Karl Rohr	[26] [27] [30] [31] [32] [33] [34] [36] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [50] [51] [52] [54]
72	Sebastian Sager	[25] [28]
73	Kurt Sätzler	[1] [2]
74	Gunnar Schramm	[25] [28] [35]
75	Falk Schubert	[9] [11] [17] [24]
76	Hanna Seitz	[25] [28]
77	Priyanka Shahi	[20]
78	Irina Solovei	[12]
79	David Spector	[39]
80	Sándor Suhai	[11] [24]
81	Bernhard Tausch	[17]
82	Kathrin Teller	[26] [34] [48]
83	Jochen Ulrich	[21]
84	Markus Ulrich	[21]
85	Ivayla Vacheva	[18]
86	Coral del Val	[24]
87	Arunachalam Vinayagam	[11] [24]
88	Dietmar Volz	[14]
89	Patrick Warnat	[16]
90	Marco Weismueller	[7]
91	Ilka Wörz	[51]
92	Stefan Wörz	[38] [43] [50] [52] [54]
93	Siwei Yang	[26] [34] [36] [39] [41] [45] [48]
94	Marc Zapatka	[25] [28] [35]
95	Daniele Zink	[2]

Colors in the list of coauthors