 | 2009 |
|---|
| 13 |       | Francisco Fernandes,
Luísa Pereira,
Ana T. Freitas:
CSA: An efficient algorithm to improve circular DNA multiple alignment.
BMC Bioinformatics 10: (2009) |
| 2008 |
|---|
| 12 | | Pedro T. Monteiro,
Delphine Ropers,
Radu Mateescu,
Ana T. Freitas,
Hidde de Jong:
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks.
ECAI 2008: 229-233 |
| 11 | | Pedro T. Monteiro,
Delphine Ropers,
Radu Mateescu,
Ana T. Freitas,
Hidde de Jong:
Temporal logic patterns for querying dynamic models of cellular interaction networks.
ECCB 2008: 227-233 |
| 10 | | Alexandre P. Francisco,
Arlindo L. Oliveira,
Ana T. Freitas:
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.
ISBRA 2008: 220-231 |
| 9 | | Ana C. Casimiro,
Susana Vinga,
Ana T. Freitas,
Arlindo L. Oliveira:
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.
BMC Bioinformatics 9: (2008) |
| 8 | | Pedro T. Monteiro,
Nuno D. Mendes,
Miguel C. Teixeira,
Sofia d'Orey,
Sandra Tenreiro,
Nuno P. Mira,
Hélio Pais,
Alexandre P. Francisco,
Alexandra M. Carvalho,
Artur B. Lourenço,
Isabel Sá-Correia,
Arlindo L. Oliveira,
Ana T. Freitas:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.
Nucleic Acids Research 36(Database-Issue): 132-136 (2008) |
| 2006 |
|---|
| 7 | | Nuno D. Mendes,
Ana C. Casimiro,
Pedro M. Santos,
Isabel Sá-Correia,
Arlindo L. Oliveira,
Ana T. Freitas:
MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Bioinformatics 22(24): 2996-3002 (2006) |
| 6 | | Alexandra M. Carvalho,
Ana T. Freitas,
Arlindo L. Oliveira,
Marie-France Sagot:
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 126-140 (2006) |
| 5 | | Miguel C. Teixeira,
Pedro T. Monteiro,
Pooja Jain,
Sandra Tenreiro,
Alexandra R. Fernandes,
Nuno P. Mira,
Marta Alenquer,
Ana T. Freitas,
Arlindo L. Oliveira,
Isabel Sá-Correia:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.
Nucleic Acids Research 34(Database-Issue): 446-451 (2006) |
| 2005 |
|---|
| 4 | | Alexandra M. Carvalho,
Ana T. Freitas,
Arlindo L. Oliveira,
Marie-France Sagot:
A highly scalable algorithm for the extraction of CIS-regulatory regions.
APBC 2005: 273-282 |
| 2004 |
|---|
| 3 | | Alexandra M. Carvalho,
Arlindo L. Oliveira,
Ana T. Freitas,
Marie-France Sagot:
A parallel algorithm for the extraction of structured motifs.
SAC 2004: 147-153 |
| 2 | | Alexandra M. Carvalho,
Ana T. Freitas,
Arlindo L. Oliveira,
Marie-France Sagot:
Efficient Extraction of Structured Motifs Using Box-Links.
SPIRE 2004: 267-268 |
| 2003 |
|---|
| 1 | | Ana T. Freitas,
Arlindo L. Oliveira:
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation.
DATE 2003: 10764-10769 |
