 | 2009 |
|---|
| 95 |       | Nicholas J. Tustison,
Suyash P. Awate,
Gang Song,
Tessa Sundaram Cook,
James C. Gee:
A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration.
IPMI 2009: 215-226 |
| 94 | | Suyash P. Awate,
Paul A. Yushkevich,
Zhuang Song,
Daniel J. Licht,
James C. Gee:
Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease.
IPMI 2009: 552-563 |
| 93 | | Alonso Ramirez-Manzanares,
Mariano Rivera,
James C. Gee:
Denoising Intra-voxel Axon Fiber Orientations by Means of ECQMMF Method.
MICAI 2009: 303-312 |
| 92 | | Hui Zhang,
Suyash P. Awate,
Sandhitsu R. Das,
John H. Woo,
Elias R. Melhem,
James C. Gee,
Paul A. Yushkevich:
A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features.
MICCAI (1) 2009: 141-149 |
| 91 | | Suyash P. Awate,
Paul A. Yushkevich,
Daniel J. Licht,
James C. Gee:
Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences.
MICCAI (1) 2009: 200-207 |
| 90 | | Hui Zhang,
Paul A. Yushkevich,
Daniel Rueckert,
James C. Gee:
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter.
MICCAI (1) 2009: 466-473 |
| 89 | | Yuanjie Zheng,
Murray Grossman,
Suyash P. Awate,
James C. Gee:
Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images.
MICCAI (1) 2009: 852-859 |
| 88 | | Nicholas J. Tustison,
Brian B. Avants,
James C. Gee:
Directly Manipulated Free-Form Deformation Image Registration.
IEEE Transactions on Image Processing 18(3): 624-635 (2009) |
| 2008 |
|---|
| 87 | | Hui Sun,
Brian B. Avants,
Alejandro F. Frangi,
Sebastián Ordas,
James C. Gee,
Paul A. Yushkevich:
Branching medial models for cardiac shape representation.
ISBI 2008: 1485-1488 |
| 86 | | Paul A. Yushkevich,
Brian B. Avants,
John Pluta,
David Minkoff,
Stephen Pickup,
Weixia Liu,
John A. Detre,
Murray Grossman,
James C. Gee:
Building an atlas of hippocampal subfields using postmortem MRI.
ISBI 2008: 161-164 |
| 85 | | Suyash P. Awate,
Hui Zhang,
Tony J. Simon,
James C. Gee:
Multivariate segmentation of brain tissues by fusion of MRI and DTI data.
ISBI 2008: 213-216 |
| 84 | | Sandhitsu R. Das,
Dawn Mechanic-Hamilton,
Marc Korczykowski,
Brian B. Avants,
John A. Detre,
James C. Gee,
Paul A. Yushkevich:
Spatial correspondence based asymmetry analysis in FMRI.
ISBI 2008: 616-619 |
| 83 | | Hui Zhang,
Paul A. Yushkevich,
Tony J. Simon,
James C. Gee:
Surface-based modeling of white matter fasciculi with orientation encoding.
ISBI 2008: 708-711 |
| 82 | | Zhuang Song,
Suyash P. Awate,
James C. Gee:
Nonparametric Markov priors for tissue segmentation.
ISBI 2008: 73-76 |
| 81 | | Nicholas J. Tustison,
Suyash P. Awate,
Talissa A. Altes,
James C. Gee,
Jing Cai,
G. Wilson Miller,
Eduard E. de Lange,
John P. Mugler III:
Point-set registration of tagged HE-3 images using a structurally-based Jensen-Shannon divergence measure within a deterministic annealing framework.
ISBI 2008: 772-775 |
| 80 | | Philip A. Cook,
Hui Zhang,
Suyash P. Awate,
James C. Gee:
Atlas-guided probabilistic diffusion-tensor fiber tractography.
ISBI 2008: 951-954 |
| 79 | | Alonso Ramirez-Manzanares,
Philip A. Cook,
James C. Gee:
A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans.
MICCAI (1) 2008: 305-312 |
| 78 | | Paul A. Yushkevich,
Brian B. Avants,
John Pluta,
David Minkoff,
John A. Detre,
Murray Grossman,
James C. Gee:
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI.
MICCAI (1) 2008: 510-517 |
| 77 | | Suyash P. Awate,
Lawrence Win,
Paul A. Yushkevich,
Robert T. Schultz,
James C. Gee:
3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes.
MICCAI (1) 2008: 559-567 |
| 76 | | Hui Sun,
Brian B. Avants,
Alejandro F. Frangi,
Federico Sukno,
James C. Gee,
Paul A. Yushkevich:
Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis.
MICCAI (2) 2008: 766-773 |
| 2007 |
|---|
| 75 | | Nicholas J. Tustison,
Brian B. Avants,
James C. Gee:
Improved FFD B-Spline Image Registration.
ICCV 2007: 1-8 |
| 74 | | Sandhitsu R. Das,
Brian B. Avants,
Murray Grossman,
James C. Gee:
Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation.
ICCV 2007: 1-8 |
| 73 | | Gang Song,
Brian B. Avants,
James C. Gee:
Multi-start Method with Prior Learning for Image Registration.
ICCV 2007: 1-8 |
| 72 | | Paul A. Yushkevich,
Hui Zhang,
Tony J. Simon,
James C. Gee:
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation.
ICCV 2007: 1-8 |
| 71 | | Suyash P. Awate,
James C. Gee:
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis.
IPMI 2007: 296-307 |
| 70 | | Nicholas J. Tustison,
Talissa A. Altes,
James C. Gee,
Jing Cai,
Eduard E. de Lange,
John P. Mugler III:
Pulmonary Kinematics from Hyperpolarized Helium-3 Tagged Magnetic Resonance Imaging.
ISBI 2007: 368-371 |
| 69 | | Paul A. Yushkevich,
John A. Detre,
James C. Gee:
Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis.
ISBI 2007: 420-423 |
| 68 | | Brian B. Avants,
Charles L. Epstein,
James C. Gee:
Symmetric Shape Averaging in the Diffeomorphic Space.
ISBI 2007: 636-639 |
| 67 | | Suyash P. Awate,
Hui Zhang,
James C. Gee:
Fuzzy Nonparametric DTI Segmentation for Robust Cingulum-Tract Extraction.
MICCAI (1) 2007: 294-301 |
| 66 | | Brian B. Avants,
Jeffrey Duda,
Hui Zhang,
James C. Gee:
Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies.
MICCAI (1) 2007: 359-366 |
| 65 | | Tessa Sundaram Cook,
Nicholas J. Tustison,
Jürgen Biederer,
Ralf Tetzlaff,
James C. Gee:
How Do Registration Parameters Affect Quantitation of Lung Kinematics?
MICCAI (1) 2007: 817-824 |
| 64 | | Zhuang Song,
Suyash P. Awate,
Daniel J. Licht,
James C. Gee:
Clinical Neonatal Brain MRI Segmentation Using Adaptive Nonparametric Data Models and Intensity-Based Markov Priors.
MICCAI (1) 2007: 883-890 |
| 63 | | Hui Zhang,
Paul A. Yushkevich,
Daniel Rueckert,
James C. Gee:
Unbiased White Matter Atlas Construction Using Diffusion Tensor Images.
MICCAI (2) 2007: 211-218 |
| 62 | | Brian B. Avants,
Chivon Anderson,
Murray Grossman,
James C. Gee:
Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia.
MICCAI (2) 2007: 303-310 |
| 61 | | Hui Sun,
Paul A. Yushkevich,
Hui Zhang,
Philip A. Cook,
Jeffrey Duda,
Tony J. Simon,
James C. Gee:
Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis.
MICCAI (2) 2007: 777-784 |
| 60 | | Suyash P. Awate,
Hui Zhang,
James C. Gee:
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis: With Applications to DTI-Tract Extraction.
IEEE Trans. Med. Imaging 26(11): 1525-1536 (2007) |
| 59 | | Hui Zhang,
Brian B. Avants,
Paul A. Yushkevich,
John H. Woo,
S. Wang,
L. F. McCluskey,
L. B. Elman,
Elias R. Melhem,
James C. Gee:
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis.
IEEE Trans. Med. Imaging 26(11): 1585-1597 (2007) |
| 58 | | James C. Gee,
Paul M. Thompson:
Guest editorial: Special Issue on Computational Neuroanatomy.
IEEE Trans. Med. Imaging 26(4): 425-426 (2007) |
| 57 | | Hui Sun,
Paul A. Yushkevich,
Hui Zhang,
Philip A. Cook,
J. T. Duda,
Tony J. Simon,
James C. Gee:
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis.
IEEE Trans. Med. Imaging 26(9): 1166-1178 (2007) |
| 56 | | Lydia Ng,
Sayan D. Pathak,
Chihchau Kuan,
Christopher Lau,
Hong-wei Dong,
Andrew Sodt,
Chinh Dang,
Brian B. Avants,
Paul A. Yushkevich,
James C. Gee,
David R. Haynor,
Ed Lein,
Allan Jones,
Michael Hawrylycz:
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain.
IEEE/ACM Trans. Comput. Biology Bioinform. 4(3): 382-393 (2007) |
| 2006 |
|---|
| 55 | | Zhuang Song,
Nicholas J. Tustison,
Brian B. Avants,
James C. Gee:
Adaptive graph cuts with tissue priors for brain MRI segmentation.
ISBI 2006: 762-765 |
| 54 | | Nicholas J. Tustison,
James C. Gee:
Generalized n-D Ck B-Spline Scattered Data Approximation with Confidence Values.
MIAR 2006: 76-83 |
| 53 | | Brian B. Avants,
Charles L. Epstein,
James C. Gee:
Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms.
MIAR 2006: 9-16 |
| 52 | | Paul A. Yushkevich,
John A. Detre,
Kathy Z. Tang,
Angela Hoang,
Dawn Mechanic-Hamilton,
María A. Fernández-Seara,
Marc Korczykowski,
Hui Zhang,
James C. Gee:
Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps.
MICCAI (2) 2006: 284-291 |
| 51 | | Zhuang Song,
Nicholas J. Tustison,
Brian B. Avants,
James C. Gee:
Integrated Graph Cuts for Brain MRI Segmentation.
MICCAI (2) 2006: 831-838 |
| 50 | | Paul A. Yushkevich,
Brian B. Avants,
Lydia Ng,
Michael Hawrylycz,
Pablo D. Burstein,
Hui Zhang,
James C. Gee:
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach.
WBIR 2006: 230-237 |
| 49 | | Nicholas J. Tustison,
Brian B. Avants,
Tessa A. Sundaram,
Jeffrey Duda,
James C. Gee:
A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework.
WBIR 2006: 238-246 |
| 48 | | Brian B. Avants,
Murray Grossman,
James C. Gee:
Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe.
WBIR 2006: 50-57 |
| 47 | | Paul A. Yushkevich,
Hui Zhang,
James C. Gee:
Continuous Medial Representation for Anatomical Structures.
IEEE Trans. Med. Imaging 25(12): 1547-1564 (2006) |
| 2005 |
|---|
| 46 | | Despina Kontos,
Vasileios Megalooikonomou,
James C. Gee:
Reducing the Computational Cost for Statistical Medical Image Analysis: An MRI Study on the Sexual Morphological Differentiation of the Corpus Callosum.
CBMS 2005: 282-287 |
| 45 | | Paul A. Yushkevich,
Hui Zhang,
James C. Gee:
Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions.
IPMI 2005: 162-173 |
| 44 | | Philip A. Cook,
Hui Zhang,
Brian B. Avants,
Paul A. Yushkevich,
Daniel C. Alexander,
James C. Gee,
O. Ciccarelli,
A. J. Thompson:
An Automated Approach to Connectivity-Based Partitioning of Brain Structures.
MICCAI 2005: 164-171 |
| 43 | | Hui Zhang,
Paul A. Yushkevich,
James C. Gee:
Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization.
MICCAI 2005: 172-179 |
| 42 | | Tessa A. Sundaram,
Brian B. Avants,
James C. Gee:
Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data.
MICCAI (2) 2005: 328-335 |
| 41 | | Paul A. Yushkevich,
Hui Zhang,
James C. Gee:
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation.
MICCAI (2) 2005: 725-732 |
| 40 | | Brian B. Avants,
Charles L. Epstein,
James C. Gee:
Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images.
VLSM 2005: 247-258 |
| 39 | | Suneeta Ramaswami,
Marcelo Siqueira,
Tessa A. Sundaram,
Jean H. Gallier,
James C. Gee:
Constrained quadrilateral meshes of bounded size.
Int. J. Comput. Geometry Appl. 15(1): 55-98 (2005) |
| 2004 |
|---|
| 38 | | Hui Zhang,
Paul A. Yushkevich,
James C. Gee:
Registration of Diffusion Tensor Images.
CVPR (1) 2004: 842-847 |
| 37 | | Brian B. Avants,
James C. Gee:
Symmetric Geodesic Shape Averaging and Shape Interpolation.
ECCV Workshops CVAMIA and MMBIA 2004: 99-110 |
| 36 |  | Hui Zhang,
Paul A. Yushkevich,
James C. Gee:
Towards Diffusion Profile Image Registration.
ISBI 2004: 324-327 |
| 35 | | Brian B. Avants,
James C. Gee:
Shape Averaging with Diffeomorphic Flows for Atlas Creation.
ISBI 2004: 595-598 |
| 34 | | Tessa A. Sundaram,
Brian B. Avants,
James C. Gee:
A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images.
MICCAI (2) 2004: 1000-1007 |
| 33 | | Abraham Dubb,
Paul A. Yushkevich,
Zhiyong Xie,
Ruben C. Gur,
Raquel E. Gur,
James C. Gee:
Regional Structural Characterization of the Brain of Schizophrenia Patients.
MICCAI (2) 2004: 688-695 |
| 32 | | Alexei Manso Correa Machado,
James C. Gee,
Mario Fernando Montenegro Campos:
Structural shape characterization via exploratory factor analysis.
Artificial Intelligence in Medicine 30(2): 97-118 (2004) |
| 2003 |
|---|
| 31 | | James C. Gee,
J. B. Antoine Maintz,
Michael W. Vannier:
Biomedical Image Registration, Second International Workshop, WBIR 2003, Philadelphia, PA, USA, June 23-24, 2003, Revised Papers
Springer 2003 |
| 30 | | Suneeta Ramaswami,
Marcelo Siqueira,
Tessa A. Sundaram,
Jean H. Gallier,
James C. Gee:
A New Algorithm for Generating Quadrilateral Meshes and its Application to FE-Based Image Registration.
IMR 2003: 159-170 |
| 29 | | Brian B. Avants,
James C. Gee:
The Shape Operator for Differential Analysis of Images.
IPMI 2003: 101-113 |
| 28 | | Abraham Dubb,
Zhiyong Xie,
Ruben C. Gur,
Raquel E. Gur,
James C. Gee:
Characterization of Brain Plasticity in Schizophrenia Using Template Deformation.
MICCAI (2) 2003: 457-463 |
| 27 | | Brian B. Avants,
James C. Gee:
Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection.
Scale-Space 2003: 798-813 |
| 26 | | Brian B. Avants,
James C. Gee:
Formulation and Evaluation of Variational Curve Matching with Prior Constraints.
WBIR 2003: 21-30 |
| 25 | | Peter Rogelj,
Stanislav Kovacic,
James C. Gee:
Point similarity measures for non-rigid registration of multi-modal data.
Computer Vision and Image Understanding 92(1): 112-140 (2003) |
| 2002 |
|---|
| 24 | | Mariano Rivera,
James C. Gee:
Image Segmentation by Flexible Models Based on Robust Regularized Networks.
ECCV (3) 2002: 621-634 |
| 23 | | Brian B. Avants,
James C. Gee:
Robust rotations between anatomical curves.
ISBI 2002: 337-340 |
| 22 | | Luis Ibáñez,
Lydia Ng,
James C. Gee,
Stephen R. Aylward:
Registration patterns: the generic framework for image registration of the insight toolkit.
ISBI 2002: 345-348 |
| 21 | | James C. Gee,
Daniel C. Alexander,
Mariano Rivera,
Jeffrey Duda:
Non-rigid registration of diffusion tensor MR images.
ISBI 2002: 477-480 |
| 20 | | Aljaz Noe,
James C. Gee:
Efficient Partial Volume Tissue Classification in MRI Scans.
MICCAI (1) 2002: 698-705 |
| 19 | | James C. Gee,
Tessa A. Sundaram,
Ichiro Hasegawa,
Hidemasa Uematsu,
Hiroto Hatabu:
Characterization of Regional Pulmonary Mechanics from Serial MRI Data.
MICCAI (1) 2002: 762-769 |
| 18 | | Michael P. Lin,
Christian Devita,
James C. Gee,
Murray Grossman:
Using Voxel-Based Morphometry to Examine Atrophy-Behavior Correlates in Alzheimer's Disease and Frontotemporal Dementia.
MICCAI (1) 2002: 770-776 |
| 17 | | Abraham Dubb,
Brian B. Avants,
Ruben C. Gur,
James C. Gee:
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation.
MICCAI (2) 2002: 381-388 |
| 16 | | Alexei Manso Correa Machado,
James C. Gee,
Mario Fernando Montenegro Campos:
Substructural Segmentation Based on Regional Shape Differences.
SIBGRAPI 2002: 3-10 |
| 2001 |
|---|
| 15 | | David J. Pettey,
James C. Gee:
Using a Linear Diagnostic Function and Non-rigid Registration to Search for Morphological Differences Between Populations: An Example Involving the Male and Female Corpus Callosum.
IPMI 2001: 372-379 |
| 14 | | Aljaz Noe,
James C. Gee:
Partial Volume Segmentation of Cerebral MRI Scans with Mixture Model Clustering.
IPMI 2001: 423-430 |
| 13 | | Brian B. Avants,
Marcelo Siqueira,
James C. Gee:
Computing Match Functions for Curves in R2 and R3 by Refining Polyline Approximations.
MICCAI 2001: 1178-1179 |
| 12 | | Daniel C. Alexander,
Carlo Pierpaoli,
Peter J. Basser,
James C. Gee:
Spatial Transformations of Diffusion Tensor Magnetic Resonance Images.
IEEE Trans. Med. Imaging 20(11): 1131-1139 (2001) |
| 2000 |
|---|
| 11 | | Alexei Manso Correa Machado,
Mario Fernando Montenegro Campos,
James C. Gee:
Probabilistic Intensity Mapping in MRI Image Registration.
SIBGRAPI 2000: 74-81 |
| 10 | | Daniel C. Alexander,
James C. Gee:
Elastic Matching of Diffusion Tensor Images.
Computer Vision and Image Understanding 77(2): 233-250 (2000) |
| 1999 |
|---|
| 9 | | Daniel C. Alexander,
James C. Gee,
Ruzena Bajcsy:
Similarity Measures for Matching Diffusion Tensor Images.
BMVC 1999 |
| 8 | | Daniel C. Alexander,
James C. Gee,
Ruzena Bajcsy:
Elastic Matching of Diffusion Tensor MRIs.
CVPR 1999: 1244-1249 |
| 7 | | Alexei Manso Correa Machado,
Mario Fernando Montenegro Campos,
James C. Gee:
Method for Estimating the Intensity Mapping between MRI Images.
IPMI 1999: 496-501 |
| 6 | | Alexei Manso Correa Machado,
James C. Gee,
Mario Fernando Montenegro Campos:
Exploratory Factor Analysis in Morphometry.
MICCAI 1999: 378-385 |
| 5 | | Daniel C. Alexander,
James C. Gee,
Ruzena Bajcsy:
Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images.
MICCAI 1999: 463-472 |
| 4 | | James C. Gee:
On matching brain volumes.
Pattern Recognition 32(1): 99-111 (1999) |
| 1997 |
|---|
| 3 | | James C. Gee,
David R. Haynor,
Lionel Le Briquer,
Ruzena Bajcsy:
Advances in elastic matching theory and its implementation.
CVRMed 1997: 63-72 |
| 2 | | Lionel Le Briquer,
James C. Gee:
Design of a Statistical Model of Brain Shape.
IPMI 1997: 477-482 |
| 1993 |
|---|
| 1 | | James C. Gee,
Woodrow Barfield,
David R. Haynor,
Yongmin Kim:
User Interface Design for Medical Imaging Workstations: Image Display and Processing.
Interacting with Computers 5(3): 279-294 (1993) |
