Adam Godzik

	2009
31		Yoshinobu Igarashi, Emily Heureux, Kutbuddin S. Doctor, Priti Talwar, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Michael L. Blinov, Salmaz S. Ibragimova, Sarah Boyd, Boris Ratnikov, Piotr Cieplak, Adam Godzik, Jeffrey W. Smith, Andrei Osterman, Alexey M. Eroshkin: PMAP: databases for analyzing proteolytic events and pathways. Nucleic Acids Research 37(Database-Issue): 611-618 (2009)
	2008
30		Mallika Veeramalai, Yuzhen Ye, Adam Godzik: TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics 9: (2008)
	2007
29		Lukasz Slabinski, Adam Godzik, Leszek Rychlewski: TOM - Task and Object Management for Grid Clusters. GCA 2007: 199-205
28		Ana P. C. Rodrigues, Barry J. Grant, Adam Godzik, Iddo Friedberg: The 2006 Automated Function Prediction Meeting. BMC Bioinformatics 8(S-4): (2007)
27		Iddo Friedberg, Tim Harder, Rachel Kolodny, Einat Sitbon, Zhanwen Li, Adam Godzik: Using an alignment of fragment strings for comparing protein structures. Bioinformatics 23(2): 219-224 (2007)
26		Lukasz Slabinski, Lukasz Jaroszewski, Leszek Rychlewski, Ian A. Wilson, Scott A. Lesley, Adam Godzik: XtalPred: a web server for prediction of protein crystallizability. Bioinformatics 23(24): 3403-3405 (2007)
25		Yoshinobu Igarashi, Alexey M. Eroshkin, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Jeffrey W. Smith, Andrei Osterman, Adam Godzik: CutDB: a proteolytic event database. Nucleic Acids Research 35(Database-Issue): 546-549 (2007)
	2006
24		Yuzhen Ye, Zhanwen Li, Adam Godzik: Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins. Pacific Symposium on Biocomputing 2006: 439-450
23		Degui Zhi, S. Sri Krishna, Haibo Cao, Pavel A. Pevzner, Adam Godzik: Representing and comparing protein structures as paths in three-dimensional space. BMC Bioinformatics 7: 460 (2006)
22		Weizhong Li, Adam Godzik: Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22(13): 1658-1659 (2006)
21		Weizhong Li, Adam Godzik: VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics 22(7): 887-888 (2006)
20		Zhanwen Li, Yuzhen Ye, Adam Godzik: Flexible Structural Neighborhood - a database of protein structural similarities and alignments. Nucleic Acids Research 34(Database-Issue): 277-280 (2006)
19		Iddo Friedberg, Tim Harder, Adam Godzik: JAFA: a protein function annotation meta-server. Nucleic Acids Research 34(Web-Server-Issue): 379-381 (2006)
	2005
18		Yuzhen Ye, Andrei Osterman, Ross A. Overbeek, Adam Godzik: Automatic detection of subsystem/pathway variants in genome analysis. ISMB (Supplement of Bioinformatics) 2005: 478-486
17		Yuzhen Ye, Adam Godzik: Multiple flexible structure alignment using partial order graphs. Bioinformatics 21(10): 2362-2369 (2005)
16		Iddo Friedberg, Adam Godzik: Fragnostic: walking through protein structure space. Nucleic Acids Research 33(Web-Server-Issue): 249-251 (2005)
15		Lukasz Jaroszewski, Leszek Rychlewski, Zhanwen Li, Weizhong Li, Adam Godzik: FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Research 33(Web-Server-Issue): 284-288 (2005)
	2004
14		Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook: The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing 2004: 375-386
13		Dariusz Plewczynski, Leszek Rychlewski, Yuzhen Ye, Lukasz Jaroszewski, Adam Godzik: Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics 5: 98 (2004)
12		Yuzhen Ye, Adam Godzik: FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Research 32(Web-Server-Issue): 582-585 (2004)
	2003
11		Yuzhen Ye, Adam Godzik: Flexible structure alignment by chaining aligned fragment pairs allowing twists. ECCB 2003: 246-255
10		Marcin Grynberg, Lukasz Jaroszewski, Adam Godzik: Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics 4: 46 (2003)
9		Yuzhen Ye, Lukasz Jaroszewski, Weizhong Li, Adam Godzik: A segment alignment approach to protein comparison. Bioinformatics 19(6): 742-749 (2003)
	2002
8		Baohong Zhang, Adam Godzik: The Meaning and Limitations of Protein Structure Alignments. 3DPVT 2002: 729-736
7		Weizhong Li, Lukasz Jaroszewski, Adam Godzik: Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 18(1): 77-82 (2002)
	2001
6		Weizhong Li, Lukasz Jaroszewski, Adam Godzik: Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17(3): 282-283 (2001)
	2000
5		Lukasz Jaroszewski, Adam Godzik: Search for a New Description of Protein Topology and Local Structure. ISMB 2000: 211-217
4		Weizhong Li, Frederic Pio, Krzysztof Pawlowski, Adam Godzik: Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics 16(12): 1105-1110 (2000)
3		Krzysztof Pawlowski, Leszek Rychlewski, John C. Reed, Adam Godzik: From Fold to Function Predictions: An Apoptosis Regulator Protein BID. Computers & Chemistry 24(3-4): 511-517 (2000)
	1994
2		Adam Godzik, Jeffrey Skolnick: Flexible algorithm for direct multiple alignment of protein structures and sequences. Computer Applications in the Biosciences 10(6): 587-596 (1994)
	1993
1		Adam Godzik, Andrzej Kolinski, Jeffrey Skolnick: De novo and inverse folding predictions of protein structure and dynamics. Journal of Computer-Aided Molecular Design 7(4): 397-438 (1993)

Coauthor Index

1	C. K. J. Allerston	[14]
2	Michael L. Blinov	[31]
3	Philip E. Bourne	[14]
4	Sarah Boyd	[31]
5	Haibo Cao	[23]
6	Li Chen	[14]
7	Piotr Cieplak	[31]
8	Kutbuddin S. Doctor	[31]
9	Alexey M. Eroshkin	[25] [31]
10	Iddo Friedberg	[14] [16] [19] [27] [28]
11	Zoubin Ghahramani	[14]
12	Kosi Gramatikoff	[25] [31]
13	Svetlana Gramatikova	[25] [31]
14	Barry J. Grant	[28]
15	Marcin Grynberg	[10]
16	Tim Harder	[19] [27]
17	Emily Heureux	[31]
18	Seungwoo Hwang	[14]
19	Salmaz S. Ibragimova	[31]
20	Yoshinobu Igarashi	[25] [31]
21	Lukasz Jaroszewski	[5] [6] [7] [9] [10] [13] [15] [26]
22	Andrzej Kolinski	[1]
23	Rachel Kolodny	[27]
24	Werner G. Krebs	[14]
25	S. Sri Krishna	[23]
26	Scott A. Lesley	[26]
27	Weizhong Li	[4] [6] [7] [9] [15] [21] [22]
28	Wilfred W. Li	[14]
29	Zhanwen Li	[15] [20] [24] [27]
30	Tong Liu	[14]
31	Andrei Osterman	[18] [25] [31]
32	Ross A. Overbeek	[18]
33	Krzysztof Pawlowski	[3] [4]
34	Pavel A. Pevzner	[23]
35	Frederic Pio	[4]
36	Dariusz Plewczynski	[13]
37	Boris Ratnikov	[31]
38	John C. Reed	[3]
39	Ana P. C. Rodrigues	[28]
40	Leszek Rychlewski	[3] [13] [15] [26] [29]
41	Ilya N. Shindyalov	[14]
42	Einat Sitbon	[27]
43	Jeffrey Skolnick	[1] [2]
44	Lukasz Slabinski	[26] [29]
45	Jeffrey W. Smith	[25] [31]
46	Priti Talwar	[31]
47	Mallika Veeramalai	[30]
48	John D. Westbrook	[14]
49	David L. Wild	[14]
50	Ian A. Wilson	[26]
51	Yuzhen Ye	[9] [11] [12] [13] [17] [18] [20] [24] [30]
52	Baohong Zhang	[8]
53	Ying Zhang	[25] [31]
54	Degui Zhi	[23]

Colors in the list of coauthors