Sridhar Hannenhalli

	2009
32		Matthew Hansen, Logan Everett, Larry Singh, Sridhar Hannenhalli: Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction. WABI 2009: 133-144
31		Logan Everett, Antony Vo, Sridhar Hannenhalli: PTM-Switchboard - a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids Research 37(Database-Issue): 66-71 (2009)
	2008
30		Sridhar Hannenhalli: Eukaryotic transcription factor binding sites - modeling and integrative search methods. Bioinformatics 24(11): 1325-1331 (2008)
29		Raffaele Giancarlo, Sridhar Hannenhalli: Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 482-483 (2008)
	2007
28		Raffaele Giancarlo, Sridhar Hannenhalli: Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings Springer 2007
	2006
27		Perry Evans, Greg Donahue, Sridhar Hannenhalli: Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative Genomics 2006: 186-199
26		Logan Everett, Li-San Wang, Sridhar Hannenhalli: Dense subgraph computation via stochastic search: application to detect transcriptional modules. ISMB (Supplement of Bioinformatics) 2006: 117-123
	2005
25		Sridhar Hannenhalli, Li-San Wang: Enhanced position weight matrices using mixture models. ISMB (Supplement of Bioinformatics) 2005: 204-212
24		Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli: An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory Genomics 2005: 225-234
23		Junwen Wang, Sridhar Hannenhalli: Generalizations of Markov model to characterize biological sequences. BMC Bioinformatics 6: 219 (2005)
	2004
22		Vineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph: A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Journal of Computational Biology 11(5): 858-866 (2004)
	2002
21		Piotr Berman, Sridhar Hannenhalli, Marek Karpinski: 1.375-Approximation Algorithm for Sorting by Reversals. ESA 2002: 200-210
	2001
20		Sridhar Hannenhalli, Samuel Levy: Promoter prediction in the human genome. ISMB (Supplement of Bioinformatics) 2001: 90-96
19		Samuel Levy, Sridhar Hannenhalli, Christopher T. Workman: Enrichment of regulatory signals in conserved non-coding genomic sequence. Bioinformatics 17(10): 871-877 (2001)
18		Piotr Berman, Sridhar Hannenhalli, Marek Karpinski: 1.375-Approximation Algorithm for Sorting by Reversals Electronic Colloquium on Computational Complexity (ECCC) 8(47): (2001)
	2000
17		Vineet Bafna, Sridhar Hannenhalli, Ken Rice, Lisa Vawter: Ligand-Receptor Pairing Via Tree Comparison. Journal of Computational Biology 7(1-2): 59-70 (2000)
	1999
16		Sridhar Hannenhalli, Pavel A. Pevzner: Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. J. ACM 46(1): 1-27 (1999)
	1997
15		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena: Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. RECOMB 1997: 1-2
14		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. SODA 1997: 390-399
13		Vlado Dancík, Sridhar Hannenhalli, S. Muthukrishnan: Hardness of Flip-Cut Problems from Optical Mapping. Journal of Computational Biology 4(2): 119-126 (1997)
12		Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena: Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. Journal of Computational Biology 4(3): 275-296 (1997)
	1996
11		Piotr Berman, Sridhar Hannenhalli: Fast Sorting by Reversal. CPM 1996: 168-185
10		Sridhar Hannenhalli, Pavel A. Pevzner: To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). SODA 1996: 304-313
9		Sridhar Hannenhalli, W. Feldman, H. F. Lewis, Steven Skiena, Pavel A. Pevzner: Positional sequencing by hybridization. Computer Applications in the Biosciences 12(1): 19-24 (1996)
8		Sridhar Hannenhalli: Polynomial-time Algorithm for Computing Translocation Distance Between Genomes. Discrete Applied Mathematics 71(1-3): 137-151 (1996)
	1995
7		Sridhar Hannenhalli: Polynomial-time Algorithm for Computing Translocation Distance between Genomes. CPM 1995: 162-176
6		Sridhar Hannenhalli, Pavel A. Pevzner: Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). FOCS 1995: 581-592
5		Sridhar Hannenhalli, Pavel A. Pevzner: Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC 1995: 178-189
4		Sridhar Hannenhalli, Pavel A. Pevzner: Towards a Computational Theory of Genome Rearrangements. Computer Science Today 1995: 184-202
	1993
3		Sridhar Hannenhalli, Kalyan S. Perumalla, N. Chandrasekharan, R. Sridhar: A Distributed Algorithm for Ear Decomposition. ICCI 1993: 180-184
	1992
2		N. Chandrasekharan, Sridhar Hannenhalli: Efficient Algorithms for Computing Matching and Chromatic Polynominals on Series-Parallel Graphs. ICCI 1992: 42-45
	1991
1		Kien A. Hua, Sridhar Hannenhalli: Parallel Transitive Closure Computations Using Topological Sort. PDIS 1991: 122-129

Coauthor Index

1	Richa Agarwala	[12] [14] [15]
2	Vineet Bafna	[17] [22]
3	Serafim Batzoglou	[12] [14] [15]
4	Piotr Berman	[11] [18] [21]
5	N. Chandrasekharan	[2] [3]
6	Vlado Dancík	[12] [13] [14] [15]
7	Scott E. Decatur	[12] [14] [15]
8	Greg Donahue	[27]
9	Perry Evans	[27]
10	Logan Everett	[26] [31] [32]
11	Martin Farach-Colton (Martin Farach)	[12] [14] [15]
12	W. Feldman	[9]
13	Raffaele Giancarlo	[28] [29]
14	Dan Gusfield	[22]
15	Matthew Hansen	[32]
16	Kien A. Hua	[1]
17	Shane T. Jensen	[24]
18	Marek Karpinski	[18] [21]
19	Samuel Levy	[19] [20]
20	H. F. Lewis	[9]
21	S. Muthukrishnan (S. Muthu Muthukrishnan)	[12] [13] [15]
22	Kalyan S. Perumalla	[3]
23	Pavel A. Pevzner	[4] [5] [6] [9] [10] [16]
24	Ken Rice	[17]
25	Larry Singh	[32]
26	Steven Skiena	[9] [12] [14] [15]
27	R. Sridhar	[3]
28	Lisa Vawter	[17]
29	Antony Vo	[31]
30	Junwen Wang	[23]
31	Li-San Wang	[24] [25] [26]
32	Christopher T. Workman	[19]
33	Shibu Yooseph	[22]

Colors in the list of coauthors