Henning Hermjakob

	2009
35		Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alexander Kanapin, Suzanna Lewis, Shahana Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, Peter D'Eustachio: Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Research 37(Database-Issue): 619-622 (2009)
	2008
34		Florian Reisinger, Manuel Corpas, John Hancock, Henning Hermjakob, Ewan Birney, Pascal Kahlem: ENFIN - An Integrative Structure for Systems Biology. DILS 2008: 132-143
33		Henning Hermjakob: EBI Proteomics Services. DILS 2008: 207
32		Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Corinne Cassier-Chauvat, Franck Chauvat, Jean-Christophe Aude, Pierre Legrain, Henning Hermjakob: InteroPORC: an automated tool to predict highly conserved protein interaction networks. BMC Bioinformatics 9(S-10): (2008)
31		Andrew M. Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert D. Finn, Henning Hermjakob, Tim J. P. Hubbard, Rafael C. Jimenez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José R. Macías, Gabrielle A. Reeves, Andreas Prlic: Integrating biological data - the Distributed Annotation System. BMC Bioinformatics 9(S-8): (2008)
30		Kieran O'Neill, Alexander García Castro, Anita Schwegmann, Rafael C. Jimenez, Dan Jacobson, Henning Hermjakob: OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology. BMC Bioinformatics 9: (2008)
29		Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe Aude, Pierre Legrain, Henning Hermjakob: InteroPORC: automated inference of highly conserved protein interaction networks. Bioinformatics 24(14): 1625-1631 (2008)
28		Rafael C. Jimenez, Antony F. Quinn, Alexander García Castro, Alberto Labarga, Kieran O'Neill, Fernando Martinez, Gustavo A. Salazar, Henning Hermjakob: Dasty2, an Ajax protein DAS client. Bioinformatics 24(18): 2119-2121 (2008)
27		Gabrielle A. Reeves, Karen Eilbeck, Michele Magrane, Claire O'Donovan, Luisa Montecchi-Palazzi, Midori A. Harris, Sandra E. Orchard, Rafael C. Jimenez, Andreas Prlic, Tim J. P. Hubbard, Henning Hermjakob, Janet M. Thornton: The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinformatics 24(23): 2767-2772 (2008)
26		Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber: Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinformatics 24(8): 1100-1101 (2008)
25		Sandra E. Orchard, Henning Hermjakob: The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world. Briefings in Bioinformatics 9(2): 166-173 (2008)
24		Philip Jones, Richard G. Côté, Sang Yun Cho, Sebastian Klie, Lennart Martens, Antony F. Quinn, David Thorneycroft, Henning Hermjakob: PRIDE: new developments and new datasets. Nucleic Acids Research 36(Database-Issue): 878-883 (2008)
23		Richard G. Côté, Philip Jones, Lennart Martens, Rolf Apweiler, Henning Hermjakob: The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Research 36(Web-Server-Issue): 372-376 (2008)
22		Jennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard G. Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard: ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Research 36(Web-Server-Issue): 485-490 (2008)
	2007
21		Sebastian Klie, Lennart Martens, Juan Antonio Vizcaino, Richard G. Côté, Philip Jones, Rolf Apweiler, Alexander Hinneburg, Henning Hermjakob: An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. German Conference on Bioinformatics 2007: 174-184
20		Sebastian Klie, Alexander Hinneburg, Lennart Martens, Juan Antonio Vizcaino, Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob: Analysing latent topics in large-scale proteomics. LWA 2007: 73-80
19		Richard G. Côté, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob: The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics 8: (2007)
18		Samuel Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, Emily Dimmer, M. Feuermann, A. Friedrichsen, Rachael P. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, J. Risse, K. Robbe, Bernd Roechert, David Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob: IntAct - open source resource for molecular interaction data. Nucleic Acids Research 35(Database-Issue): 561-565 (2007)
	2006
17		Samuel Kerrien, Henning Hermjakob: Development and implementation of the PSI MI standard for molecular interaction. Winter Simulation Conference 2006: 1587-1594
16		Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob: The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics 7: 97 (2006)
15		Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, Rolf Apweiler: PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Research 34(Database-Issue): 659-663 (2006)
	2005
14		Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler: The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. Pacific Symposium on Biocomputing 2005
13		Philip Jones, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler: Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics 21(14): 3198-3199 (2005)
	2004
12		Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler: IntAct: an open source molecular interaction database. Nucleic Acids Research 32(Database-Issue): 452-455 (2004)
	2002
11		Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings in Bioinformatics 3(3): 225-235 (2002)
	2001
10		Kai J. Runte, Henning Hermjakob, Rolf Apweiler: Towards a New Curation Environment for the TrEMBL Database. German Conference on Bioinformatics 2001: 220
9		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)
	2000
8		Paul Kersey, Henning Hermjakob, Rolf Apweiler: VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. Bioinformatics 16(11): 1048-1049 (2000)
7		Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)
6		Kerstin M. L. Menne, Henning Hermjakob, Rolf Apweiler: A comparison of signal sequence prediction methods using a test set of signal peptides. Bioinformatics 16(8): 741-742 (2000)
	1999
5		Arno Velds, Henning Hermjakob, Rolf Apweiler: Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. German Conference on Bioinformatics 1999: 229-230
4		Henning Hermjakob, Wolfgang Fleischmann, Rolf Apweiler: Swissknife - 'lazy parsing' of SWISS-PROT entries. Bioinformatics 15(9): 771-772 (1999)
	1998
3		Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler: SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. German Conference on Bioinformatics 1998
2		T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov: Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Research 26(1): 362-367 (1998)
	1997
1		Henning Hermjakob, Robert Giegerich, Walter Arnold: RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. ISMB 1997: 131-139

Coauthor Index

1	Y. Alam-Faruque	[18]
2	Mario Albrecht	[31]
3	Elena A. Ananko	[2]
4	Rolf Apweiler	[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [18] [19] [20] [21] [23]
5	B. Aranda	[18]
6	John Armstrong	[12]
7	Walter Arnold	[1]
8	Terri K. Attwood (Teresa K. Attwood)	[7] [9] [11]
9	Jean-Christophe Aude	[29] [32]
10	Amos Bairoch	[7] [9] [11] [12]
11	I. Bancarz	[18]
12	Alex Bateman	[7] [9] [11]
13	Khalid Belhajjame	[22]
14	David Binns	[11]
15	Ewan Birney	[7] [9] [31] [34] [35]
16	Margaret Biswas	[7] [9] [11]
17	Hagen Blankenburg	[31]
18	Bernard de Bono	[35]
19	Peer Bork	[11]
20	Paul Bradley	[11]
21	A. Bridge	[18]
22	Philipp Bucher	[7] [9] [11]
23	Corinne Cassier-Chauvat	[29] [32]
24	Alexander García Castro	[28] [30]
25	Michael Caudy	[35]
26	Lorenzo Cerutti	[7] [9]
27	Gianni Cesareni	[12]
28	Franck Chauvat	[29] [32]
29	Tony Chiang	[26]
30	Sang Yun Cho	[24]
31	Richard R. Copley	[11]
32	Manuel Corpas	[34]
33	Florence Corpet	[7] [9]
34	Richard G. Côté	[15] [16] [19] [20] [21] [22] [23] [24]
35	Emmanuel Courcelle	[11]
36	David Croft	[35]
37	Michael D. R. Croning	[7] [9]
38	Peter D'Eustachio	[35]
39	William Derache	[15]
40	C. Derow	[18]
41	Emily Dimmer	[18]
42	Thomas A. Down (Thomas Down)	[13] [31]
43	Richard Durbin	[7] [9] [11]
44	Karen Eilbeck	[27]
45	Suzanne M. Embury	[22]
46	Laurent Falquet	[7] [9] [11]
47	M. Feuermann	[18]
48	Robert D. Finn	[31]
49	Wolfgang Fleischmann	[4] [7] [9] [11]
50	A. Friedrichsen	[18]
51	Phani Garapati	[35]
52	Robert Gentleman	[26]
53	Robert Giegerich	[1]
54	Marc Gillespie	[35]
55	Carole A. Goble	[22]
56	Gopal Gopinath	[35]
57	Jérôme Gouzy	[7] [9] [11]
58	Sam Griffiths-Jones	[11]
59	Andre Hackmann	[13]
60	Daniel H. Haft	[11]
61	John Hancock	[34]
62	Midori A. Harris	[27]
63	T. Heinemeyer	[2]
64	Jill Hemish	[35]
65	Alexander Hinneburg	[20] [21]
66	Simon J. Hubbard	[22]
67	Tim J. P. Hubbard	[27] [31]
68	Wolfgang Huber	[26]
69	Nicolas Hulo	[7] [9] [11]
70	Rachael P. Huntley	[18]
71	Elena V. Ignatieva	[2]
72	Dan Jacobson	[30]
73	Bijay Jassal	[35]
74	Andrew M. Jenkinson	[31]
75	Rafael C. Jimenez	[27] [28] [30] [31]
76	Inge Jonassen	[7] [9]
77	David T. Jones	[22]
78	Philip Jones	[13] [15] [16] [19] [20] [21] [22] [23] [24] [31]
79	Andreas Kähäri	[13] [31]
80	Pascal Kahlem	[34]
81	Daniel Kahn	[7] [9] [11]
82	Alexander Kanapin	[7] [9] [11] [35]
83	Youla Karavidopoulou	[7] [9]
84	Alexander E. Kel	[2]
85	Olga V. Kel-Margoulis	[2]
86	Samuel Kerrien	[12] [17] [18] [19] [26] [29] [32]
87	Paul Kersey	[8]
88	J. Khadake	[18]
89	Sebastian Klie	[20] [21] [24]
90	C. Kohler	[18]
91	Nikolay A. Kolchanov	[2]
92	F. A. Kolpakov	[2]
93	Maria Krestyaninova	[11]
94	Ernst Kretschmann	[13]
95	Eugene Kulesha	[31]
96	Alberto Labarga	[28]
97	Fiona Lang	[3]
98	Pierre Legrain	[29] [32]
99	Rasko Leinonen	[19]
100	C. Leroy	[18]
101	Ivica Letunic	[11]
102	Chris Lewington	[12]
103	Suzanna Lewis	[35]
104	Nianhua Li	[26]
105	A. Liban	[18]
106	C. Lieftink	[18]
107	Quan Lin	[19]
108	Rodrigo Lopez	[7] [9] [11]
109	José R. Macías	[31]
110	Michele Magrane	[27]
111	Shahana Mahajan	[35]
112	Hanah Margalit	[12]
113	Lennart Martens	[15] [19] [20] [21] [23] [24]
114	Maria Jesus Martin	[3]
115	Nigel J. Martin	[22]
116	Fernando Martinez	[28]
117	Beate Marx	[7] [9]
118	Lisa Matthews	[35]
119	Bruce May	[35]
120	Kerstin M. L. Menne	[6]
121	Magali Michaut	[29] [32]
122	Luisa Montecchi-Palazzi	[12] [14] [18] [27] [29] [32]
123	Sugath Mudali	[12]
124	Nicola J. Mulder	[7] [9] [11]
125	Claire O'Donovan	[3] [27]
126	Kieran O'Neill	[28] [30]
127	Thomas M. Oinn (Tom Oinn)	[7] [9]
128	Stephen G. Oliver	[22]
129	Sandra E. Orchard	[12] [14] [18] [25] [26] [27]
130	Sue Orchard	[11]
131	Christine A. Orengo	[22]
132	Marco Pagni	[7] [9] [11]
133	Norman W. Paton	[22]
134	Melissa M. Pentony	[22]
135	David Peyruc	[11]
136	Olga A. Podkolodnaya	[2]
137	Nikolay L. Podkolodny	[2]
138	Chris P. Ponting	[11]
139	Alexandra Poulovassilis	[22]
140	Andreas Prlic	[27] [31]
141	Antony F. Quinn	[13] [15] [24] [28]
142	Gabrielle A. Reeves	[27] [31]
143	Florian Reisinger	[19] [34]
144	Ingmar Reuter	[2]
145	J. Risse	[18]
146	K. Robbe	[18]
147	Bernd Roechert	[12] [18]
148	Peter Roepstorff	[12]
149	Kai J. Runte	[10]
150	Gustavo A. Salazar	[28]
151	Esther Schmidt	[35]
152	Anita Schwegmann	[30]
153	Julian N. Selley	[22]
154	Florence Servant	[7] [9] [11]
155	David James Sherman	[12]
156	Jennifer A. Siepen	[22]
157	Christian J. A. Sigrist	[7] [9] [11]
158	Lincoln Stein	[35]
159	Robert Stevens (Robert D. Stevens)	[22]
160	Chris F. Taylor	[15]
161	David Thorneycroft	[18] [24]
162	Janet M. Thornton	[27]
163	Alfonso Valencia	[12]
164	Imre Vastrik	[35]
165	Arno Velds	[5]
166	Martin Vingron	[12]
167	Nisha Vinod	[13]
168	Juan Antonio Vizcaino	[20] [21]
169	Daniela Wieser	[13]
170	Edgar Wingender	[2]
171	Guanming Wu	[35]
172	Lucas Zamboulis	[22]
173	Evgeni M. Zdobnov	[7] [9]
174	Y. Zhang	[18]