 | 2009 |
| 16 |  | Benedict Paten,
Javier Herrero,
Kathryn Beal,
Ewan Birney:
Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.
Bioinformatics 25(3): 295-301 (2009) |
| 15 |  | Tim J. P. Hubbard,
B. L. Aken,
Sarah C. Ayling,
Benoit Ballester,
Kathryn Beal,
E. Bragin,
S. Brent,
Yuan Chen,
P. Clapham,
Laura Clarke,
G. Coates,
S. Fairley,
S. Fitzgerald,
J. Fernandez-Banet,
L. Gordon,
Stefan Gräf,
Syed Haider,
Martin Hammond,
Richard C. G. Holland,
Kevin L. Howe,
Andrew M. Jenkinson,
N. Johnson,
Andreas Kähäri,
Damian Keefe,
S. Keenan,
R. Kinsella,
Felix Kokocinski,
Eugene Kulesha,
Daniel Lawson,
I. Longden,
Karine Megy,
Patrick Meidl,
B. Overduin,
A. Parker,
B. Pritchard,
D. Rios,
M. Schuster,
Guy Slater,
Damian Smedley,
William Spooner,
G. Spudich,
S. Trevanion,
Albert J. Vilella,
J. Vogel,
S. White,
S. Wilder,
Arek Zadissa,
Ewan Birney,
Fiona Cunningham,
Val Curwen,
Richard Durbin,
X. M. Fernandez-Suarez,
Javier Herrero,
Arek Kasprzyk,
Glenn Proctor,
James Smith,
Stephen M. J. Searle,
Paul Flicek:
Ensembl 2009.
Nucleic Acids Research 37(Database-Issue): 690-697 (2009) |
| 2008 |
| 14 |  | Paul Flicek,
B. L. Aken,
Kathryn Beal,
Benoit Ballester,
Mario Cáccamo,
Yuan Chen,
Laura Clarke,
G. Coates,
Fiona Cunningham,
Tim Cutts,
Thomas A. Down,
S. C. Dyer,
T. Eyre,
S. Fitzgerald,
J. Fernandez-Banet,
Stefan Gräf,
Syed Haider,
Martin Hammond,
Richard C. G. Holland,
Kevin L. Howe,
K. Howe,
N. Johnson,
Andrew M. Jenkinson,
Andreas Kähäri,
Damian Keefe,
Felix Kokocinski,
Eugene Kulesha,
Daniel Lawson,
I. Longden,
Karine Megy,
Patrick Meidl,
B. Overduin,
A. Parker,
B. Pritchard,
Andreas Prlic,
S. Rice,
D. Rios,
M. Schuster,
I. Sealy,
Guy Slater,
Damian Smedley,
G. Spudich,
S. Trevanion,
Albert J. Vilella,
J. Vogel,
S. White,
M. Wood,
Ewan Birney,
Tony Cox,
Val Curwen,
Richard Durbin,
X. M. Fernandez-Suarez,
Javier Herrero,
Tim J. P. Hubbard,
Arek Kasprzyk,
Glenn Proctor,
James Smith,
Abel Ureta-Vidal,
Stephen M. J. Searle:
Ensembl 2008.
Nucleic Acids Research 36(Database-Issue): 707-714 (2008) |
| 2007 |
| 13 |  | Tim J. P. Hubbard,
B. L. Aken,
Kathryn Beal,
Benoit Ballester,
Mario Cáccamo,
Yuan Chen,
Laura Clarke,
G. Coates,
Fiona Cunningham,
Tim Cutts,
Thomas Down,
S. C. Dyer,
S. Fitzgerald,
J. Fernandez-Banet,
Stefan Gräf,
Syed Haider,
Martin Hammond,
Javier Herrero,
Richard C. G. Holland,
Kevin L. Howe,
K. Howe,
N. Johnson,
Andreas Kähäri,
Damian Keefe,
Felix Kokocinski,
Eugene Kulesha,
Daniel Lawson,
I. Longden,
Craig Melsopp,
Karine Megy,
Patrick Meidl,
B. Overduin,
A. Parker,
Andreas Prlic,
S. Rice,
D. Rios,
M. Schuster,
I. Sealy,
J. Severin,
Guy Slater,
Damian Smedley,
G. Spudich,
S. Trevanion,
Albert J. Vilella,
J. Vogel,
S. White,
M. Wood,
Tony Cox,
Val Curwen,
Richard Durbin,
X. M. Fernandez-Suarez,
Paul Flicek,
Arek Kasprzyk,
Glenn Proctor,
Stephen M. J. Searle,
James Smith,
Abel Ureta-Vidal,
Ewan Birney:
Ensembl 2007.
Nucleic Acids Research 35(Database-Issue): 610-617 (2007) |
| 2006 |
| 12 |  | Ewan Birney,
T. Daniel Andrews,
Mario Cáccamo,
Yuan Chen,
Laura Clarke,
G. Coates,
Tony Cox,
Fiona Cunningham,
Val Curwen,
Tim Cutts,
Thomas Down,
Richard Durbin,
X. M. Fernandez-Suarez,
Paul Flicek,
Stefan Gräf,
Martin Hammond,
Javier Herrero,
Kevin L. Howe,
V. Iyer,
K. Jekosch,
Andreas Kähäri,
Arek Kasprzyk,
Damian Keefe,
Felix Kokocinski,
Eugene Kulesha,
D. London,
I. Longden,
Craig Melsopp,
Patrick Meidl,
B. Overduin,
A. Parker,
Glenn Proctor,
Andreas Prlic,
Mark Rae,
D. Rios,
Seth Redmond,
M. Schuster,
I. Sealy,
Stephen M. J. Searle,
J. Severin,
Guy Slater,
Damian Smedley,
James Smith,
Arne Stabenau,
Jim Stalker,
S. Trevanion,
Abel Ureta-Vidal,
J. Vogel,
S. White,
Cara Woodwark,
Tim J. P. Hubbard:
Ensembl 2006.
Nucleic Acids Research 34(Database-Issue): 556-561 (2006) |
| 11 |  | David Montaner,
Joaquín Tárraga,
Jaime Huerta-Cepas,
Jordi Burguet-Castell,
Juan M. Vaquerizas,
Lucía Conde,
Pablo Minguez,
Javier Vera,
Sach Mukherjee,
Joan Valls,
Miguel A. G. Pujana,
Eva Alloza,
Javier Herrero,
Fátima Al-Shahrour,
Joaquín Dopazo:
Next station in microarray data analysis: GEPAS.
Nucleic Acids Research 34(Web-Server-Issue): 486-491 (2006) |
| 2005 |
| 10 |  | Tim J. P. Hubbard,
D. Andrews,
Mario Cáccamo,
Graham Cameron,
Yuan Chen,
Michele E. Clamp,
Laura Clarke,
G. Coates,
Tony Cox,
Fiona Cunningham,
Val Curwen,
Tim Cutts,
Thomas Down,
Richard Durbin,
X. M. Fernandez-Suarez,
James Gilbert,
Martin Hammond,
Javier Herrero,
H. Hotz,
Kevin L. Howe,
V. Iyer,
K. Jekosch,
Andreas Kähäri,
Arek Kasprzyk,
Damian Keefe,
S. Keenan,
Felix Kokocinski,
D. London,
I. Longden,
Graham P. McVicker,
Craig Melsopp,
Patrick Meidl,
Simon C. Potter,
Glenn Proctor,
Mark Rae,
D. Rios,
M. Schuster,
Stephen M. J. Searle,
J. Severin,
Guy Slater,
Damian Smedley,
James Smith,
William Spooner,
Arne Stabenau,
Jim Stalker,
R. Storey,
S. Trevanion,
Abel Ureta-Vidal,
J. Vogel,
S. White,
Cara Woodwark,
Ewan Birney:
Ensembl 2005.
Nucleic Acids Research 33(Database-Issue): 447-453 (2005) |
| 9 |  | Juan M. Vaquerizas,
Lucía Conde,
Patricio Yankilevich,
Amaya Cabezón,
Pablo Minguez,
Ramón Díaz-Uriarte,
Fátima Al-Shahrour,
Javier Herrero,
Joaquín Dopazo:
GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.
Nucleic Acids Research 33(Web-Server-Issue): 616-620 (2005) |
| 2004 |
| 8 |  | Javier Herrero,
Juan M. Vaquerizas,
Fátima Al-Shahrour,
Lucía Conde,
Álvaro Mateos,
Javier Santoyo,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
New Challenges in Gene Expression Data Analysis and the Extended GEPAS.
Spanish Bioinformatics Conference 2004: 1-5 |
| 7 |  | Javier Herrero,
Juan M. Vaquerizas,
Fátima Al-Shahrour,
Lucía Conde,
Álvaro Mateos,
Javier Santoyo,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
New challenges in gene expression data analysis and the extended GEPAS.
Nucleic Acids Research 32(Web-Server-Issue): 485-491 (2004) |
| 2003 |
| 6 |  | Michal Karzynski,
Álvaro Mateos,
Javier Herrero,
Joaquín Dopazo:
Using a Genetic Algorithm and a Perceptron for Feature Selection and Supervised Class Learning in DNA Microarray Data.
Artif. Intell. Rev. 20(1-2): 39-51 (2003) |
| 5 |  | Javier Herrero,
Ramón Díaz-Uriarte,
Joaquín Dopazo:
Gene expression data preprocessing.
Bioinformatics 19(5): 655-656 (2003) |
| 4 |  | Javier Herrero,
Fátima Al-Shahrour,
Ramón Díaz-Uriarte,
Álvaro Mateos,
Juan M. Vaquerizas,
Javier Santoyo,
Joaquín Dopazo:
GEPAS: a web-based resource for microarray gene expression data analysis.
Nucleic Acids Research 31(13): 3461-3467 (2003) |
| 3 |  | Lucía Conde,
Álvaro Mateos,
Javier Herrero,
Joaquín Dopazo:
Improved Class Prediction in DNA Microarray Gene Expression Data by Unsupervised Reduction of the Dimensionality followed by Supervised Learning with a Perceptron.
VLSI Signal Processing 35(3): 245-253 (2003) |
| 2002 |
| 2 |  | Álvaro Mateos,
Javier Herrero,
Joaquín Dopazo:
Using Perceptrons for Supervised Classification of DNA Microarray Samples: Obtaining the Optimal Level of Information and Finding Differentially Expressed Genes.
ICANN 2002: 577-582 |
| 2001 |
| 1 |  | Javier Herrero,
Alfonso Valencia,
Joaquín Dopazo:
A hierarchical unsupervised growing neural network for clustering gene expression patterns.
Bioinformatics 17(1): 126-136 (2001) |