Eric P. Hoffman

	2011
34		Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Huai Li, Eric P. Hoffman, Robert Clarke, Yue Wang: Motif-guided sparse decomposition of gene expression data for regulatory module identification. BMC Bioinformatics 12: 82 (2011)
33		Guoqiang Yu, Huai Li, Sook S. Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang: PUGSVM: a caBIGTM analytical tool for multiclass gene selection and predictive classification. Bioinformatics 27(5): 736-738 (2011)
32		Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Wang: DDN: a caBIG® analytical tool for differential network analysis. Bioinformatics 27(7): 1036-1038 (2011)
	2010
31		Chen Wang, Sook S. Ha, Yue Joseph Wang, Jianhua Xuan, Eric P. Hoffman: Computational Analysis of Muscular Dystrophy Sub-types Using a Novel Integrative Scheme. ICMLA 2010: 287-292
30		Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke: Knowledge-guided gene ranking by coordinative component analysis. BMC Bioinformatics 11: 162 (2010)
29		Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Multilevel support vector regression analysis to identify condition-specific regulatory networks. Bioinformatics 26(11): 1416-1422 (2010)
28		Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Wang: Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases. Journal of Machine Learning Research 11: 2141-2167 (2010)
	2009
27		Bai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Differential dependency network analysis to identify condition-specific topological changes in biological networks. Bioinformatics 25(4): 526-532 (2009)
26		Li Chen, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman, Rebecca B. Riggins, Robert Clarke: Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. I. J. Computational Biology and Drug Design 2(1): 1-20 (2009)
25		Bo Hyoung Kim, Bongshin Lee, Susan Knoblach, Eric P. Hoffman, Jinwook Seo: GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories. IEEE Trans. Vis. Comput. Graph. 15(6): 905-912 (2009)
24		Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman: Biomarker identification by knowledge-driven multilevel ICA and motif analysis. IJDMB 3(4): 365-381 (2009)
	2008
23		Chen Wang, Jianhua Xuan, Li Chen, Eric P. Hoffman, Robert Clarke: Reliability Analysis of Transcriptional Regulatory Networks. BCBGC 2008: 42-48
22		Jianghui Xiong, Chen Wang, Bai Zhang, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke, Jianhua Xuan: Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data. BCBGC 2008: 49-55
21		Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information. BIOCOMP 2008: 191-197
20		Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. BIOCOMP 2008: 23-28
19		Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman: Integrative Network Component Analysis for Regulatory Network Reconstruction. ISBRA 2008: 196-207
18		Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke: Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. ISBRA 2008: 244-255
17		Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke: Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinformatics 9: (2008)
16		Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman: Motif-directed network component analysis for regulatory network inference. BMC Bioinformatics 9(S-1): (2008)
15		Yitan Zhu, Huai Li, David J. Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang: caBIGTM VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data. BMC Bioinformatics 9: (2008)
	2007
14		Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang: Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis. BIOCOMP 2007: 132-138
13		Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan: Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. ICMLA 2007: 560-566
12		Jianhua Xuan, Yue Joseph Wang, Yibin Dong, Yuanjian Feng, Bin Wang, Javed I. Khan, Marina Bakay, Zuyi Wang, Lauren Pachman, Sara Winokur, Yi-Wen Chen, Robert Clarke, Eric P. Hoffman: Gene Selection for Multiclass Prediction by Weighted Fisher Criterion. EURASIP J. Bioinformatics and Systems Biology 2007: (2007)
	2006
11		Justin Molineaux, Jianhua Xuan, Ting Gong, Yitan Zhu, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: ModVis: An information visualization tool for gene module discovery. CAINE 2006: 24-31
10		Jinwook Seo, Eric P. Hoffman: Probe set algorithms: is there a rational best bet? BMC Bioinformatics 7: 395 (2006)
9		Zuyi Wang, Yue Joseph Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, Eric P. Hoffman: Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data. Bioinformatics 22(6): 755-761 (2006)
8		Jinwook Seo, Heather Gordish-Dressman, Eric P. Hoffman: An interactive power analysis tool for microarray hypothesis testing and generation. Bioinformatics 22(7): 808-814 (2006)
	2005
7		Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Normalization of Microarray Data by Iterative Nonlinear Regression. BIBE 2005: 267-270
	2004
6		Jianhua Xuan, Yibin Dong, Javed I. Khan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang: Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling. ICPR (2) 2004: 291-294
5		Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman, Eric P. Hoffman: Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays. Bioinformatics 20(16): 2534-2544 (2004)
4		Josephine Chen, Po Zhao, Donald Massaro, Linda B. Clerch, Richard R. Almon, Debra C. DuBois, William J. Jusko, Eric P. Hoffman: The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface. Nucleic Acids Research 32(Database-Issue): 578-581 (2004)
	2002
3		Rehannah H. A. Borup, Stefano Toppo, Yi-Wen Chen, Tanya M. Teslovich, Gerolamo Lanfranchi, Giorgio Valle, Eric P. Hoffman: Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs. BMC Bioinformatics 3: 33 (2002)
2		Marina Bakay, Yi-Wen Chen, Rehannah H. A. Borup, Po Zhao, Kanneboyina Nagaraju, Eric P. Hoffman: Sources of variability and effect of experimental approach on expression profiling data interpretation. BMC Bioinformatics 3: 4 (2002)
	1994
1		Dhiraj K. Pathak, Eric P. Hoffman, Mark W. Perlin: Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers. ISMB 1994: 331-339

Coauthor Index

1	Richard R. Almon	[4]
2	Marina Bakay	[2] [5] [9] [12]
3	Rehannah H. A. Borup	[2] [3]
4	Josephine Chen	[4]
5	Li Chen	[13] [16] [17] [18] [19] [20] [23] [24] [26] [29] [34]
6	Yi-Wen Chen	[2] [3] [5] [12]
7	Robert Clarke	[6] [7] [9] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [26] [27] [28] [29] [30] [32] [33] [34]
8	Linda B. Clerch	[4]
9	Ben Davidson	[28]
10	Yibin Dong	[6] [9] [12]
11	Debra C. DuBois	[4]
12	Yuanjian Feng	[9] [12] [28]
13	Ting Gong	[11] [14] [18] [21] [34]
14	Heather Gordish-Dressman	[8]
15	Sook S. Ha	[31] [33]
16	Leena Hilakivi-Clarke	[32]
17	Sara Hilmer	[5]
18	Lu Jin	[32]
19	William J. Jusko	[4]
20	Javed I. Khan	[6] [12]
21	Bo Hyoung Kim	[25]
22	Susan Knoblach	[25]
23	Gerolamo Lanfranchi	[3]
24	Bongshin Lee	[25]
25	Huai Li	[15] [27] [30] [32] [33] [34]
26	Subha Madhavan	[32] [33]
27	Donald Massaro	[4]
28	David J. Miller	[15] [28]
29	Justin Molineaux	[11]
30	Kanneboyina Nagaraju	[2]
31	Lauren Pachman	[12]
32	Dhiraj K. Pathak	[1]
33	Mark W. Perlin	[1]
34	Rebecca B. Riggins	[18] [20] [21] [26] [27] [29] [34]
35	Jinwook Seo	[5] [8] [10] [25]
36	Ie-Ming Shih	[13] [17] [24] [28] [32] [33]
37	Ben Shneiderman	[5]
38	Tanya M. Teslovich	[3]
39	Ye Tian	[32]
40	Stefano Toppo	[3]
41	Giorgio Valle	[3]
42	Bin Wang	[12]
43	Chen Wang	[13] [14] [16] [17] [19] [22] [23] [24] [30] [31]
44	Tian-Li Wang	[13] [24]
45	Yue Wang	[28] [32] [34]
46	Yue Joseph Wang	[6] [7] [9] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [24] [26] [27] [29] [30] [31] [33]
47	Zuyi Wang	[9] [12] [15]
48	Sara Winokur	[12]
49	Jianghui Xiong	[22]
50	Jianhua Xuan (Jianhua Jason Xuan)	[6] [7] [9] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [26] [27] [28] [29] [30] [31] [32] [33] [34]
51	Guoqiang Yu	[28] [33]
52	Ming Zhan	[27] [30]
53	Bai Zhang	[22] [27] [32]
54	Zhen Zhang	[13] [17] [24] [27]
55	Po Zhao	[2] [4] [16] [19]
56	Yitan Zhu	[11] [15]

Colors in the list of coauthors

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page