Liisa Holm

	2012
37		Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn: The Pfam protein families database. Nucleic Acids Research 40(Database-Issue): 290-301 (2012)
	2011
36		Hung Xuan Ta, Patrik Koskinen, Liisa Holm: A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees. Bioinformatics 27(5): 700-706 (2011)
35		Matti Kankainen, Peddinti V. Gopalacharyulu, Liisa Holm, Matej Oresic: MPEA - metabolite pathway enrichment analysis. Bioinformatics [ISMB/ECCB] 27(13): 1878-1879 (2011)
	2010
34		Katja Astikainen, Esa Pitkänen, Juho Rousu, Liisa Holm, Sándor Szedmák: Reaction Kernels - Structured Output Prediction Approaches for Novel Enzyme Function. BIOINFORMATICS 2010: 48-55
33		Robert D. Finn, Jaina Mistry, John G. Tate, Penny C. Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 38(Database-Issue): 211-222 (2010)
32		Liisa Holm, Päivi Rosenström: Dali server: conservation mapping in 3D. Nucleic Acids Research 38(Web-Server-Issue): 545-549 (2010)
	2009
31		Hitomi Hasegawa, Liisa Holm: Evaluation of Novel Protein Structure Comparison Algorithms Based on Objective Function Rankings. BMEI 2009: 1-6
30		Petri Törönen, Pauli J. Ojala, Pekka Marttinen, Liisa Holm: Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function. BMC Bioinformatics 10: 307 (2009)
29		Petri Törönen, Petri Pehkonen, Liisa Holm: Generation of Gene Ontology benchmark datasets with various types of positive signal. BMC Bioinformatics 10: 319 (2009)
28		Ilya Plyusnin, Liisa Holm, Matti Kankainen: LOCP - locating pilus operons in Gram-positive bacteria. Bioinformatics 25(9): 1187-1188 (2009)
	2008
27		Liisa Holm, S. Kääriäinen, Päivi Rosenström, A. Schenkel: Searching protein structure databases with DaliLite v.3. Bioinformatics 24(23): 2780-2781 (2008)
26		Andreas Heger, Eija Korpelainen, Taavi Hupponen, Kimmo Mattila, Vesa Ollikainen, Liisa Holm: PairsDB atlas of protein sequence space. Nucleic Acids Research 36(Database-Issue): 276-280 (2008)
	2007
25		Andreas Heger, Swapan Mallick, Christopher Andrew Wilton, Liisa Holm: The global trace graph, a novel paradigm for searching protein sequence databases. Bioinformatics 23(18): 2361-2367 (2007)
	2006
24		Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm: Bayesian search of functionally divergent protein subgroups and their function specific residues. Bioinformatics 22(20): 2466-2474 (2006)
23		Matti Kankainen, Petri Pehkonen, Päivi Rosenström, Petri Törönen, Garry Wong, Liisa Holm: POXO: a web-enabled tool series to discover transcription factor binding sites. Nucleic Acids Research 34(Web-Server-Issue): 534-540 (2006)
	2005
22		Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak: PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinformatics 21(10): 2541-2543 (2005)
21		Andreas Heger, Christopher Andrew Wilton, Ashwin Sivakumar, Liisa Holm: ADDA: a domain database with global coverage of the protein universe. Nucleic Acids Research 33(Database-Issue): 188-191 (2005)
20		Matti Kankainen, Liisa Holm: POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets. Nucleic Acids Research 33(Web-Server-Issue): 427-431 (2005)
	2004
19		Andreas Heger, Michael Lappe, Liisa Holm: Accurate Detection of Very Sparse Sequence Motifs. Journal of Computational Biology 11(5): 843-857 (2004)
18		Matti Kankainen, Liisa Holm: POBO, transcription factor binding site verification with bootstrapping. Nucleic Acids Research 32(Web-Server-Issue): 222-229 (2004)
	2003
17		Andreas Heger, Liisa Holm: Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins. ISMB (Supplement of Bioinformatics) 2003: 130-137
16		Andreas Heger, Michael Lappe, Liisa Holm: Accurate detection of very sparse sequence motifs. RECOMB 2003: 139-147
	2001
15		Michael Lappe, Jong Park, Oliver Niggemann, Liisa Holm: Generating protein interaction maps from incomplete data: application to fold assignment. ISMB (Supplement of Bioinformatics) 2001: 149-156
14		Andreas Heger, Liisa Holm: Picasso: generating a covering set of protein family profiles. Bioinformatics 17(3): 272-279 (2001)
13		Sabine Dietmann, Jong Park, Cédric Notredame, Andreas Heger, Michael Lappe, Liisa Holm: A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. Nucleic Acids Research 29(1): 55-57 (2001)
	2000
12		Jong Park, Sabine Dietmann, Andreas Heger, Liisa Holm: Estimating the significance of sequence order in protein secondary structure and prediction. Bioinformatics 16(11): 978-987 (2000)
11		Jong Park, Liisa Holm, Cyrus Chothia: Sequence search algorithm assessment and testing toolkit (SAT). Bioinformatics 16(2): 104-110 (2000)
10		Jong Park, Liisa Holm, Andreas Heger, Cyrus Chothia: RSDB: representative protein sequence databases have high information content. Bioinformatics 16(5): 458-464 (2000)
9		Liisa Holm, Jong Park: DaliLite workbench for protein structure comparison. Bioinformatics 16(6): 566-567 (2000)
	1999
8		Liisa Holm, Chris Sander: Protein folds and families: sequence and structure alignments. Nucleic Acids Research 27(1): 244-247 (1999)
	1998
7		Cédric Notredame, Liisa Holm, Desmond G. Higgins: COFFEE: an objective function for multiple sequence alignments. Bioinformatics 14(5): 407-422 (1998)
6		Liisa Holm, Chris Sander: Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics 14(5): 423-429 (1998)
5		Liisa Holm, Chris Sander: Touring protein fold space with Dali/FSSP. Nucleic Acids Research 26(1): 316-319 (1998)
	1997
4		Liisa Holm, Chris Sander: Decision Support System for the Evolutionary Classification of Protein Structures. ISMB 1997: 140-146
3		Liisa Holm, Chris Sander: Dali/FSSP classification of three-dimensional protein folds. Nucleic Acids Research 25(1): 231-234 (1997)
	1996
2		Liisa Holm, Chris Sander: The FSSP database: fold classification based on structure-structure alignment of proteins. Nucleic Acids Research 24(1): 206-209 (1996)
	1995
1		Liisa Holm, Chris Sander: 3-D Lookup: Fast Protein Structure Database Searches at 90% Reliability. ISMB 1995: 179-187

Coauthor Index

1	Katja Astikainen	[34]
2	Alex Bateman	[33] [37]
3	Jonghwa Bhak	[22]
4	Dan M. Bolser	[22]
5	Chris Boursnell	[37]
6	Goran Ceric	[33] [37]
7	Yoobok Cho	[22]
8	Hansol Choi	[22]
9	Hwanho Choi	[22]
10	Cyrus Chothia	[10] [11]
11	Jody Clements	[37]
12	Penny C. Coggill	[33] [37]
13	Jukka Corander	[24]
14	Panos Dafas	[22]
15	Sabine Dietmann	[12] [13]
16	Ruth Y. Eberhardt	[37]
17	Sean R. Eddy	[33] [37]
18	Robert D. Finn	[33] [37]
19	Kristoffer Forslund	[33] [37]
20	O. Luke Gavin	[33]
21	Sungsam Gong	[22]
22	Peddinti V. Gopalacharyulu	[35]
23	Prasad Gunasekaran	[33]
24	Kyungsook Han	[22]
25	Hitomi Hasegawa	[31]
26	Andreas Heger	[10] [12] [13] [14] [16] [17] [19] [21] [25] [26] [33] [37]
27	Desmond G. Higgins	[7]
28	Taavi Hupponen	[26]
29	Insoo Jang	[22]
30	S. Kääriäinen	[27]
31	Matti Kankainen	[18] [20] [23] [28] [35]
32	Sangsoo Kim	[22]
33	Eija Korpelainen	[26]
34	Patrik Koskinen	[36]
35	Michael Lappe	[13] [15] [16] [19] [22]
36	Sunghoon Lee	[22]
37	Swapan Mallick	[25]
38	Pekka Marttinen	[24] [30]
39	Kimmo Mattila	[26]
40	Jaina Mistry	[33] [37]
41	Oliver Niggemann	[15]
42	Cédric Notredame	[7] [13]
43	Donghoon Oh	[22]
44	Pauli J. Ojala	[30]
45	Vesa Ollikainen	[26]
46	Matej Oresic	[35]
47	Ningze Pang	[37]
48	Jong Park	[9] [10] [11] [12] [13] [15]
49	Petri Pehkonen	[23] [29]
50	Esa Pitkänen	[34]
51	Ilya Plyusnin	[28]
52	Joanne E. Pollington	[33]
53	Marco Punta	[37]
54	Päivi Rosenström	[23] [27] [32]
55	Juho Rousu	[34]
56	Chris Sander	[1] [2] [3] [4] [5] [6] [8]
57	A. Schenkel	[27]
58	Michael Schroeder	[22]
59	Ashwin Sivakumar	[21]
60	Erik L. L. Sonnhammer	[33] [37]
61	Sándor Szedmák	[34]
62	Hung Xuan Ta	[36]
63	John G. Tate	[33] [37]
64	Petri Törönen	[23] [24] [29] [30]
65	Christopher Andrew Wilton	[21] [25]
66	Garry Wong	[23]
67	Giseok Yoon	[22]

Colors in the list of coauthors

Last update Fri May 25 01:42:58 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page