Ian Holmes

	2008
14		Robert K. Bradley, Lior Pachter, Ian Holmes: Specific alignment of structured RNA: stochastic grammars and sequence annealing. Bioinformatics 24(23): 2677-2683 (2008)
13		Yuri R. Bendaña, Ian Holmes: Colorstock, SScolor, Ratón: RNA alignment visualization tools. Bioinformatics 24(4): 579-580 (2008)
12		Lars Barquist, Ian Holmes: xREI: a phylo-grammar visualization webserver. Nucleic Acids Research 36(Web-Server-Issue): 65-69 (2008)
	2007
11		Robert K. Bradley, Ian Holmes: Transducers: an emerging probabilistic framework for modeling indels on trees. Bioinformatics 23(23): 3258-3262 (2007)
10		Ian Holmes: Phylocomposer and phylodirector: analysis and visualization of transducer indel models. Bioinformatics 23(23): 3263-3264 (2007)
	2006
9		Peter S. Klosterman, Andrew V. Uzilov, Yuri R. Bendaña, Robert K. Bradley, Sharon Chao, Carolin Kosiol, Nick Goldman, Ian Holmes: XRate: a fast prototyping, training and annotation tool for phylo-grammars. BMC Bioinformatics 7: 428 (2006)
	2005
8		Ian Holmes: Accelerated probabilistic inference of RNA structure evolution. BMC Bioinformatics 6: 73 (2005)
7		Ian Holmes: Using evolutionary Expectation Maximization to estimate indel rates. Bioinformatics 21(10): 2294-2300 (2005)
	2004
6		Ian Holmes: A probabilistic model for the evolution of RNA structure. BMC Bioinformatics 5: 166 (2004)
	2002
5		Ian Holmes, Gerald M. Rubin: Pairwise RNA Structure Comparison with Stochastic Context-Free Grammars. Pacific Symposium on Biocomputing 2002: 163-174
	2001
4		Ian Holmes, William J. Bruno: Evolutionary HMMs: a Bayesian approach to multiple alignment. Bioinformatics 17(9): 803-820 (2001)
	2000
3		Ian Holmes, William J. Bruno: Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data. ISMB 2000: 202-210
	1998
2		Ian Holmes, Richard Durbin: Dynamic programming alignment accuracy. RECOMB 1998: 102-108
1		Ian Holmes, Richard Durbin: Dynamic Programming Alignment Accuracy. Journal of Computational Biology 5(3): 493-504 (1998)

Coauthor Index

1	Lars Barquist	[12]
2	Yuri R. Bendaña	[9] [13]
3	Robert K. Bradley	[9] [11] [14]
4	William J. Bruno	[3] [4]
5	Sharon Chao	[9]
6	Richard Durbin	[1] [2]
7	Nick Goldman	[9]
8	Peter S. Klosterman	[9]
9	Carolin Kosiol	[9]
10	Lior Pachter	[14]
11	Gerald M. Rubin	[5]
12	Andrew V. Uzilov	[9]

Colors in the list of coauthors