Hsien-Da Huang

	2009
40		Li-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng: Detecting LTR structures in human genomic sequences using profile hidden Markov models. Expert Syst. Appl. 36(1): 668-674 (2009)
39		Li-Cheng Wu, Jian-Xin Lee, Hsien-Da Huang, Baw-Juine Liu, Jorng-Tzong Horng: An expert system to predict protein thermostability using decision tree. Expert Syst. Appl. 36(5): 9007-9014 (2009)
38		Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang: Incorporating structural characteristics for identification of protein methylation sites. Journal of Computational Chemistry 30(9): 1532-1543 (2009)
37		Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang: sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Research 37(Database-Issue): 150-154 (2009)
36		Chih-Hung Chou, Wen-Chi Chang, Chih-Min Chiu, Chih-Chang Huang, Hsien-Da Huang: FMM: a web server for metabolic pathway reconstruction and comparative analysis. Nucleic Acids Research 37(Web-Server-Issue): 129-134 (2009)
	2008
35		Li-Ching Wu, Jorng-Tzong Horng, Hsien-Da Huang, Wei-Long Chen: Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree. IEEE Transactions on Information Technology in Biomedicine 12(6): 689-695 (2008)
34		Sheng-Da Hsu, Chia-Huei Chu, Ann-Ping Tsou, Shu-Jen Chen, Hua-Chien Chen, Paul Wei-Che Hsu, Yung-Hao Wong, Yi-Hsuan Chen, Gian-Hung Chen, Hsien-Da Huang: miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic Acids Research 36(Database-Issue): 165-169 (2008)
33		Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang: RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Research 36(Web-Server-Issue): 91-96 (2008)
	2007
32		Paul Wei-Che Hsu, Li-Zen Lin, Sheng-Da Hsu, Justin Bo-Kai Hsu, Hsien-Da Huang: ViTa: prediction of host microRNAs targets on viruses. Nucleic Acids Research 35(Database-Issue): 381-385 (2007)
31		Yung-Hao Wong, Tzong-Yi Lee, Han-Kuen Liang, Chia-Mao Huang, Ting-Yuan Wang, Yi-Huan Yang, Chia-Huei Chu, Hsien-Da Huang, Ming-Tat Ko, Jenn-Kang Hwang: KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Research 35(Web-Server-Issue): 588-594 (2007)
30		Li-Cheng Wu, Jorng-Tzong Horng, Hsi-Yuan Huang, Feng-Mao Lin, Hsien-Da Huang, Meng-Feng Tsai: Primer design for multiplex PCR using a genetic algorithm. Soft Comput. 11(9): 855-863 (2007)
	2006
29		Ann-Ping Tsou, Yi-Ming Sun, C.-L. Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Jhiune Liu: Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data. IEEE Transactions on Information Technology in Biomedicine 10(3): 550-558 (2006)
28		F.-M. Lin, Hsien-Da Huang, Y.-C. Chang, Ann-Ping Tsou, P.-L. Chan, L.-C. Wu, Meng-Feng Tsai, Jorng-Tzong Horng: Database to Dynamically Aid Probe Design for Virus Identification. IEEE Transactions on Information Technology in Biomedicine 10(4): 705-713 (2006)
27		Li-Cheng Wu, Jorng-Tzong Horng, Shir-Ly Huang, Hsien-Da Huang, Baw-Jhiune Liu: Detection of discriminative sequence motifs in proteins obtained from prokaryotes grown at various temperatures. Journal of Computational Chemistry 27(6): 798-808 (2006)
26		Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang: An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. Journal of Computational Chemistry 27(9): 1020-1032 (2006)
25		Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker: miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Research 34(Database-Issue): 135-139 (2006)
24		Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang: dbPTM: an information repository of protein post-translational modification. Nucleic Acids Research 34(Database-Issue): 622-627 (2006)
23		Tzu-Hao Chang, Hsien-Da Huang, Tzu-Neng Chuang, Dray-Ming Shien, Jorng-Tzong Horng: RNAMST: efficient and flexible approach for identifying RNA structural homologs. Nucleic Acids Research 34(Web-Server-Issue): 423-428 (2006)
22		Hsi-Yuan Huang, Chia-Hung Chien, Kuan-Hua Jen, Hsien-Da Huang: RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. Nucleic Acids Research 34(Web-Server-Issue): 429-434 (2006)
21		Jui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee: ProKware: integrated software for presenting protein structural properties in protein tertiary structures. Nucleic Acids Research 34(Web-Server-Issue): 89-94 (2006)
	2005
20		Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Pak-Leong Chan, Jorng-Tzong Horng, Ming-Tat Ko: A database to aid probe design for virus identification. APBC 2005: 309-318
19		Feng-Mao Lin, Hsien-Da Huang, Hsi-Yuan Huang, Jorng-Tzong Horng: Primer design for multiplex PCR using a genetic algorithm. GECCO 2005: 475-476
18		Hsien-Da Huang, Jorng-Tzong Horng, Li-Cheng Wu, Shu-Fen Fang: Discovering Common Structural Motifs of Ribosomal Rna Secondary Structures in Prokaryotes. International Journal on Artificial Intelligence Tools 14(4): 621-640 (2005)
17		Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang: Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. Journal of Computational Chemistry 26(10): 1032-1041 (2005)
16		Hsien-Da Huang, Jorng-Tzong Horng, Feng-Mao Lin, Yu-Chung Chang, Chen-Chia Huang: SpliceInfo: an information repository for mRNA alternative splicing in human genome. Nucleic Acids Research 33(Database-Issue): 80-85 (2005)
15		Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng: KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Research 33(Web-Server-Issue): 226-229 (2005)
	2004
14		Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Horn-Cheng Lai, Ton-Yuen Chu: Identifying the Combination of Genetic Factors that Determine Susceptibility to Cervical Cancer. BIBE 2004: 325-332
13		Yi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou: RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome. DEXA 2004: 751-760
12		Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, Shir-Ly Huang: Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation. ISPAN 2004: 637-642
11		Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Feng-Mao Lin, Shir-Ly Huang, Horn-Cheng Lai, Ton-Yuen Chu: Identifying the combination of genetic factors that determine susceptibility to cervical cancer. IEEE Transactions on Information Technology in Biomedicine 8(1): 59-66 (2004)
10		Hsien-Da Huang, Jorng-Tzong Horng, Chia-Hui Chang, Tsung-Shan Tsou, Jing-Yue Hong, Baw-Jhiune Liu: A Computational Approach to Discover Differential Cooperation of Regulartory Sites in Functionally Related Genes in Yeast Genome. J. Inf. Sci. Eng. 20(6): 1141-1159 (2004)
	2003
9		Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. BIBE 2003: 297-304
8		Jorng-Tzong Horng, Feng-Mao Lin, J. H. Lin, Hsien-Da Huang, Baw-Jhiune Liu: Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. IEEE Transactions on Information Technology in Biomedicine 7(2): 93-100 (2003)
7		Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based Based on Differentially Expressed Genes in Human Genome. J. Inf. Sci. Eng. 19(6): 923-942 (2003)
6		Jorng-Tzong Horng, Hsien-Da Huang, Shih-Hsien Wang, Ming-You Chen, Shir-Ly Huang, Jenn-Kang Hwang: Computing motif correlations in proteins. Journal of Computational Chemistry 24(16): 2032-2043 (2003)
	2002
5		Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, Ueng-Cheng Yang, Yu-Chang Chang: Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae. In Silico Biology 2: 25 (2002)
4		Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, Li-Cheng Wu, Shir-Ly Huang: The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions. Journal of Computational Biology 9(4): 621-640 (2002)
	2001
3		Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao: Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. BIBE 2001: 104-111
2		Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng: Mining Combinations of Structural Motif from SSU 16 S Ribosomal RNA Secondary Structures. German Conference on Bioinformatics 2001: 170-173
1		Jorng-Tzong Horng, Hsien-Da Huang, Cho-Chun Huang, Cheng-Yan Kao: Mining Putative Regulatory Elements in Gene Promoter Regions. German Conference on Bioinformatics 2001: 90-95

Coauthor Index

1	P.-L. Chan	[28]
2	Pak-Leong Chan	[20]
3	Chia-Hui Chang	[10]
4	Heng-Yi Chang	[37]
5	Huei-Lin Chang	[7] [9]
6	Tzu-Hao Chang	[23] [33]
7	Wen-Chi Chang	[36] [38]
8	Y.-C. Chang	[28]
9	Yu-Chang Chang	[5]
10	Yu-Chung Chang	[16] [20] [40]
11	Gian-Hung Chen	[34]
12	Hua-Chien Chen	[34]
13	Ming-You Chen	[6]
14	Shu-Jen Chen	[34]
15	Wei-Long Chen	[35]
16	Yi-Hsuan Chen	[34]
17	Chia-Hung Chien	[22]
18	Chih-Min Chiu	[36]
19	Chih-Hung Chou	[36] [37]
20	Chia-Huei Chu	[31] [34]
21	Ton-Yuen Chu	[11] [14]
22	Tzu-Neng Chuang	[23]
23	Shu-Fen Fang	[2] [3] [18]
24	Shinn-Ying Ho	[37]
25	Ivo L. Hofacker	[25]
26	Jing-Yue Hong	[10]
27	Jorng-Tzong Horng	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [23] [26] [27] [28] [29] [30] [33] [35] [38] [39] [40]
28	Justin Bo-Kai Hsu	[32] [38]
29	Paul Wei-Che Hsu	[25] [32] [34]
30	Po-Chiang Hsu	[38]
31	Sheng-Da Hsu	[25] [32] [34]
32	Kai-Chih Hu	[11] [14]
33	Chen-Chia Huang	[16]
34	Chia-Mao Huang	[31]
35	Chih-Chang Huang	[36]
36	Cho-Chun Huang	[1]
37	Hsi-Yuan Huang	[19] [22] [24] [30] [37]
38	Hsuan-Cheng Huang	[26]
39	Kuan-Tsae Huang	[17]
40	Shir-Ly Huang	[4] [5] [6] [11] [12] [13] [27]
41	Jui-Hung Hung	[21] [24]
42	Jenn-Kang Hwang	[6] [31]
43	Kuan-Hua Jen	[22]
44	Ming-Hui Jin	[4]
45	Yih-Wei Ju	[37]
46	Hsueh-Fen Juan	[26]
47	Cheng-Yan Kao	[1] [3] [9]
48	Ming-Tat Ko	[20] [31]
49	Horn-Cheng Lai	[11] [14]
50	Jian-Xin Lee	[39]
51	Tzong-Yi Lee	[15] [17] [21] [24] [26] [31] [38]
52	Ying-Chun Lee	[40]
53	Han-Kuen Liang	[31]
54	F.-M. Lin	[28]
55	Feng-Mao Lin	[8] [11] [16] [19] [20] [30]
56	J. H. Lin	[8]
57	Li-Zen Lin	[25] [32]
58	Baw-Jhiune Liu	[7] [8] [9] [10] [27] [29]
59	Baw-Juine Liu	[39]
60	C.-L. Liu	[29]
61	Dray-Ming Shien	[23] [38]
62	Peter F. Stadler	[25]
63	Yi-Ming Sun	[12] [13] [29]
64	Meng-Feng Tsai	[26] [28] [29] [30]
65	Ching-Ping Tseng	[25] [37]
66	Ann-Ping Tsou	[12] [13] [17] [25] [28] [29] [34]
67	Tsung-Shan Tsou	[7] [9] [10]
68	Shih-Wei Tzeng	[15] [17]
69	Shih-Hsien Wang	[6]
70	Ting-Yuan Wang	[31] [38]
71	Tzu-Hao Wang	[24]
72	Stefan Washietl	[25]
73	Yung-Hao Wong	[31] [34]
74	L.-C. Wu	[28]
75	Li-Cheng Wu	[4] [11] [14] [17] [18] [26] [27] [30] [39]
76	Li-Ching Wu	[35] [40]
77	Chi-Dung Yang	[37]
78	Ueng-Cheng Yang	[5]
79	Yi-Huan Yang	[31]
80	Yuh-Shyong Yang	[24]